RNA id: TCONS_00005567


Basic Information

Item Value
RNA id TCONS_00005567
length 4722
RNA type mRNA
GC content 0.48
exon number 21
gene id XLOC_003037
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41826331 ~ 41907213 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACAGCGCACTACACTAAAATGGTTCCTACTTTAGTTTTCAGCACAAGCAATCAAAGTGTGCGCAACTTCGCGCGTGAAAAATGCCCGAAATAACGCGCTAAAGGGGGAAACAAACACGGACAACTCGGACATGGAGGCGTGCGCAGAATCCGGACGCAAACTGCGCTCGATCTGCCGGAGGATGTACGATGAGAATGAGGATCTGTCAGATGTGGAGGAGATCACCAATGTCAGGGGCTTCAGTCTGGAGGACAAACTGGACAGCGCTTCATACAACAGCCAGCTAGTGCAGTTCATGGAGGGGAAAGATTTCACCTATGAATATGTTCAGAGAGAAGCGCTGCGGACCCCGCTTGTGTTTAAAGCCAAAGATGGACTGGGAATAAGGATGCCGGATCCAGAATTCACTGTGAGTGAAATCAAGGGTTTGGTTGGCAGCAGACGACCGGTGGATGTGATGGACGTCAGCACACAGAAGGGTTCAGAGATGAGTATGGCACAGTTCGTCCGCTACTACGAGACTCCCGAAGACGAGCGCGATAAATTGTTCAACGTCATCAGTCTGGAGTTCAGCCACACCAAACTGGAGAACCTGATCAAGAGACCTACAGTGGTGGATCTGGTGGATTGGGTGGACAACATGTGGCCGCGGCATCTTAAACAGAAACAAACGGAAGCCACGAACGTCATGTCTGAGATGAAATATCCCAAAGTTCAGAGATACTGTCTGATGAGTGTGAAAGGCTGCTTCACTGACTTCCACATCGACTTTGGCGGCACATCGGTTTGGTATCATGTCTTCAAAGGACAGAAGGTCTTCTGGCTGATTCCTCCAAACGCACATAACCTGTCTCTGTATGAGGACTGGGTTTTGTCAGGCAAACAGAGCGACATCTTTCTGGGTGACCGAGCAGACGGATGCCAGAGAGTCGAGCTGAAGCAGGGATACACCTTCTTCATCCCATCAGGCTGGATTCATGCCGTCTACACTCCAGAGGACACCCTGGTGTTTGGCGGGAATATTCTCCACAGTTTTAACATTCCCATGCAGCTCACTGTCTACGAAATTGAGAACAGAACAAagGTGCACTCCAAATTCCGCTACCCGTTCTTCTATGAGATGTGCTGGTATGTGCTGGAGAGATACGTCAGCTGCTTGACCAAACGTTCGCATCTCAGCCTCGAGTTTCGCAATCACACTGCTGAACCAAAGCCAGTGACTGAGAGTCTCATGTCTGCTACTCGGCTGGACATGGAGGAGGACTCGTGTGGGACAGAGGGGACGATTCTGTCCTCTTTTTCCATCCCGCCCTGTCAGACATTTAAACCGTCGGCCAATGATTCAGAAGACAGCTCCAAATCCCTTCCTTCAGAGTGTCCCAAAACGCCGTCCGGCTCCCCGGGAATGGATCACTCGGGAAAATGGAGCCACCTGACAGAGTTTGAGCTGAACGGACTCAAGGCTTTAGTGGAGAAACTCGAATCTCTTCCGGAAAATAAGAAATGCGTCCCTGAGGGCATCGAGGATCCACAAGCACTGCTGGATGACGTCAAGGTTGTCTTGAAGGAACATGCAGATGACAACCCCAAGCTGGCCATCAGCGGTTCCCCAATCGTTTGCTGGCCAAAGAAGACATTCAAGCCGCGGCCGCTCAATCGTCCAAAACCCAAGATGGGCTCGTCTCCATGCGCTGCCCCAGGCTCGACAGCAGGAGGAATGAAGCTCTCGTCGGGTCGTGGGTCATCGAGTGCCCGGCGCAGACGGACACGATGCCGGAAGTGTGAGGCATGTACAAGGAAAGAGTGTGGAGAGTGCCACTTCTGCAAGGACATGAAGAAGTTTGGTGGACCGGGCCGCATGAAGCAGTCCTGCATCATGAGACAGTGCATAGCGCCTGTTTTACCTCACACTGcggtgtgtgtggtgtgcggaGAGGCTGGGAAAGAAGACACGGTAGAGGGTGAAGATGACAAATTCAGCATGATGTTAATGGAGTGCTCCATTTGCAGTGAAATCATCCATCCAGCATGCTTGAAGGATAAGGATGCTGGTGGTGTTGTGAATGACGAGTTACCAAATTGCTGGGAGTGTCCGAAATGCAATCATGCTGGAAAGACAGGGAAACAAAAAAGAGGCCCAGGGTTTAAATACGCCTCCAATCTCCCTGGATCTCTGCTCAAAGAGCAGCGAACATTGATAAAGGAAGAACCGGACATGTCAACCGAGACCACTGCTGTTTCACCCATCACGAAGAGGAAGACGGAACATGAGGACAACCCAACCTGCAAGTCAGAAGACGCACTAAAGAAACGTTCCCCCAAACTGGAGGACAACCCGCTTCGCAAGAAGAGAAAACTCTTCGAAAAGGACTCAGACTCCAATTCCATCATCAGGAAAAAGAAGAAGCGCACCAATCCTGATGATCTCTCAACCTCTTTGATCCTGGGACACATCAAGAAGGAAAGAGAGGACGATGAGGAGTACGAGGAGCAAAACCAACCAGAAAGAAGCTTTGTGCCCTCAGAGGAAGAGGATGGTGATGATGAAAGAGatgaagaggaagaagaaaaagCGTTAagtagccgaaaagaaaatgggaAAGTTTCACATAAGACATTGGAAAGTGACCAATCACAAGGCGGATTAACCCAGGCGGGTCCCTCTAGCACTGACGCACAGTCAAAAAGCCAGCGAAAACCCAAACGTAAACCTCGACTGCCCAATAAAGAACTGAGTAAAGAGCTGAGCAAACAACTGAACCAGGAGATCCAAAAGACTGAGGATCGCCTGGCACATCAGAATGGCAGGACGGTTAAGACTGAACCCAGTAGTGACGGAGAGGACAGAAAACCACTGAATAATGGCAGCAGTCATCTTCGGGATTGGCTGGGGCCTAAATGGGAGCTAAACGGATCGTTGCGAGAGCAGACACCGGTGAGTTTGATTAGGACCACCACGCCTGCCCCTGTCTTCCGGCCCACACCTTGTCGATCTCCGCCCAAATGTGTCCAGATGGAGCGCCATGTTATCCGTCCACCTCCAATCAGCCCCCCGCCAGACCGACTACCTCTGGATGATGGGAAAAACCATGTCCTGCGGAGGGAGGTGTGGATGGGAGTCTTCAGCCACCTCATCCACAAAGACCTGTGTGTCTGTATGAGTGTCTGCAAGACTTGGAACAGATGGTGTTGTGATAAAAGACTGTGGACCAAGATCGATCTGAACCGGTGCAAGTCGATCACTCCGCTCATGCTCAGCGGGATTATCCGCAGGCAGCCCGTCTCCCTGGACCTGAGCTGGACCAACATTTCCAAGAAGCAGCTCAGCTGGCTGATCAACAGATTACCTGGTCTGCGGGTTCTGCTGTTGGCGGGCTGCTCGTGGGCCGCAGTTTCTGCTTTATGCACATCCAGTTGTCCTTTATTAAGAAATCTAGATGTACAGTGGGTAGAAGGACTCAAGGACAACCAGATAAGAGATTTACTCTCTCCACCGACAGACAACAGACCAGGTCAGCTGGATTGCAGAAGTAAGCTGAGGAATGTGGAGGATCTCTGTCTAGCCGGTCTGGACATCACAGACACGTCGCTGAAGCTGATCATAAAACACATGCCTTTACTTTCCCAACTGGACCTCAGTTACTGTAATCACATCACAGACCAGAGCGTCAACATCCTCACGGCAGCCGGCACCACCACCAGagactcactcacacacatcaaCCTGTCAGTGTGTAATAGAGTTACAGACCTGTCGTTGACCTACTTCAAGCGCTGCGGAAACATCTGTCAGATCGACCTGCGGTACTGCAAGCAAGTCACCAAGGAGGGCTGTGAGCAGTTCATCGCAGAGATGTCTGTCAGCGTGCAGTTCAGACTGATGGAAGAAAAACTACTGAGCAAACTGAGCTAGTCGACGACACAAATACACTGGCCAAACACTTGACTTAAACCCAGGGAACCAACCATTTTTGTCATCCATTTTCTACACACCATTGAAACCAGCAAAAAGAAAAATGGCAACAACACACTCCAATGCCTGAACTCCAGCAAGGGAAGAGGTTTATTCCTCTCTGGTGGCCAACTCTGCTTTTCACTGTTTGGTATTTTTTAAATTAGGTTGTTGTGCTGCTAAGGCAAACGGTTATTGGTTTTTAAGTTTACAAGGCACATCTCGCAGAGCGTGCCAATGTTAAAACGCTGTTGAAAGGCATGTTTACCCATTTGTTTTGGCATAGATGttataaaaaaaggtttattaGTCACAATGCAGTGACCAAACCGACTGTTACTTTCTTTCTCTGAAAAGAAAAACTCGAGATGCATGTGCTTTTTTTTCGTTACCATGCAAACGTTAAGCGTCATGCAGTATTAATTTTTGTATCAGAAGGGATTTCACACTTTATGTGCAGTATTAAATGCACTTATAAATATATAGAGAGACTTTATTGACAGTATTCAGTCAGtacaaagtttattttttttctacgcAGTAGGAAGCAGATTCATATCTATACTAGCTATAGTGACcgtgcagatgtttttttttttgtattgttaatTTAAGATGTGATGTCTTCTGATGTTATACGATTGTTCTACTACAGGTACATTCTCTTTTCCATACGACTATACTTTCCTTGGTTTCTTTAATATGTATATATCTGGGGGAAAACATATTTGCACTGTTTCACCTGAATAAATACAGATATTTTTTTCA

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0009303 rRNA transcription biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-13 Predicted to enable histone demethylase activity and transcription coregulator activity. Acts upstream of or within embryonic cranial skeleton morphogenesis; hematopoietic progenitor cell differentiation; and rRNA transcription. Predicted to be located in nucleus. Is expressed in central nervous system and retinal photoreceptor layer. Orthologous to human KDM2B (lysine demethylase 2B).

Ensembl:

ensembl_id ENSDART00000102530

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005562 lncRNA downstream 460961 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006123 lncRNA downstream 972501 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 1207643 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 1330389 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 1338961 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006124 lncRNA upstream 76300 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 76300 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 76300 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 76300 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005780 lncRNA upstream 76300 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005565 mRNA downstream 165171 41624711 ~ 41664427 (-) True XLOC_003036
TCONS_00005564 mRNA downstream 379144 41409264 ~ 41450454 (-) True XLOC_003035
TCONS_00005563 mRNA downstream 379231 41409255 ~ 41450367 (-) False XLOC_003035
TCONS_00005561 mRNA downstream 429549 41362390 ~ 41400049 (-) False XLOC_003034
TCONS_00005560 mRNA downstream 431935 41362390 ~ 41397663 (-) False XLOC_003034
TCONS_00005568 mRNA upstream 20279 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005569 mRNA upstream 62819 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005574 mRNA upstream 120676 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005575 mRNA upstream 122911 42029520 ~ 42039169 (-) True XLOC_003041
TCONS_00005576 mRNA upstream 137611 42044220 ~ 42087230 (-) True XLOC_003042
TCONS_00005547 other downstream 926361 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 1088151 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1291551 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1308498 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 1312000 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 63282 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 204963 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1005324 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1086237 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1629351 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00608301_00616686.mRNA True 3148 mRNA 0.47 10 CI01000158 607466 ~ 616881 (-)
bowfin (Amia calva) AMCG00018760 True 1740 mRNA 0.53 12 CM030135.1 19923370 ~ 19957267 (-)