Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005612 |
| length | 4285 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 11 |
| gene id | XLOC_003065 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 43544814 ~ 43655449 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060349 | bone morphogenesis | biological_process |
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0036076 | ligamentous ossification | biological_process |
| GO:0060914 | heart formation | biological_process |
| GO:0055007 | cardiac muscle cell differentiation | biological_process |
| GO:0055013 | cardiac muscle cell development | biological_process |
| GO:0030241 | skeletal muscle myosin thick filament assembly | biological_process |
| GO:0060536 | cartilage morphogenesis | biological_process |
| GO:0045667 | regulation of osteoblast differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0042826 | histone deacetylase binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-253 | Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including animal organ development; ligamentous ossification; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including brain; mesoderm; musculature system; pericardial region; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 20. Orthologous to human MEF2C (myocyte enhancer factor 2C). |
| ensembl_id | ENSDART00000099134 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005608 | lncRNA | downstream | 7256 | 43499529 ~ 43540184 (-) | True | XLOC_003062 |
| TCONS_00006132 | lncRNA | downstream | 7272 | 43453171 ~ 43540168 (-) | False | XLOC_003062 |
| TCONS_00006134 | lncRNA | downstream | 7396 | 43499529 ~ 43540044 (-) | False | XLOC_003062 |
| TCONS_00006133 | lncRNA | downstream | 51224 | 43484627 ~ 43496216 (-) | True | XLOC_003063 |
| TCONS_00006131 | lncRNA | downstream | 677477 | 42819956 ~ 42869963 (-) | True | XLOC_003053 |
| TCONS_00005635 | lncRNA | upstream | 586787 | 44242236 ~ 44253104 (-) | True | XLOC_003075 |
| TCONS_00005636 | lncRNA | upstream | 613032 | 44268481 ~ 44275885 (-) | True | XLOC_003076 |
| TCONS_00006135 | lncRNA | upstream | 725469 | 44380918 ~ 44387802 (-) | True | XLOC_003080 |
| TCONS_00005646 | lncRNA | upstream | 838470 | 44493919 ~ 44501719 (-) | False | XLOC_003084 |
| TCONS_00005645 | lncRNA | upstream | 838470 | 44493919 ~ 44501719 (-) | True | XLOC_003084 |
| TCONS_00005606 | mRNA | downstream | 143413 | 43355895 ~ 43404027 (-) | False | XLOC_003061 |
| TCONS_00005605 | mRNA | downstream | 154773 | 43355895 ~ 43392667 (-) | False | XLOC_003061 |
| TCONS_00005607 | mRNA | downstream | 155173 | 43355902 ~ 43392267 (-) | True | XLOC_003061 |
| TCONS_00005602 | mRNA | downstream | 212441 | 43269918 ~ 43334999 (-) | False | XLOC_003060 |
| TCONS_00005614 | mRNA | upstream | 50346 | 43705795 ~ 43721530 (-) | False | XLOC_003066 |
| TCONS_00005615 | mRNA | upstream | 53749 | 43709198 ~ 43718914 (-) | False | XLOC_003066 |
| TCONS_00005618 | mRNA | upstream | 106031 | 43761480 ~ 43771447 (-) | True | XLOC_003067 |
| TCONS_00005620 | mRNA | upstream | 183114 | 43838563 ~ 43850304 (-) | False | XLOC_003069 |
| TCONS_00005621 | mRNA | upstream | 183756 | 43839205 ~ 43844537 (-) | True | XLOC_003069 |
| TCONS_00005609 | other | downstream | 11345 | 43535960 ~ 43536095 (-) | True | XLOC_003064 |
| TCONS_00005598 | other | downstream | 518634 | 42992846 ~ 43028806 (-) | True | XLOC_003058 |
| TCONS_00005596 | other | downstream | 635393 | 42911933 ~ 42912047 (-) | True | XLOC_003057 |
| TCONS_00005579 | other | downstream | 1416032 | 42111572 ~ 42131408 (-) | True | XLOC_003044 |
| TCONS_00005570 | other | downstream | 1567776 | 41969891 ~ 41979664 (-) | True | XLOC_003039 |
| TCONS_00005616 | other | upstream | 63311 | 43718760 ~ 43759532 (-) | False | XLOC_003066 |
| TCONS_00005617 | other | upstream | 79837 | 43735286 ~ 43759479 (-) | True | XLOC_003066 |
| TCONS_00005619 | other | upstream | 176433 | 43831882 ~ 43832668 (-) | True | XLOC_003068 |
| TCONS_00005629 | other | upstream | 352760 | 44008209 ~ 44017665 (-) | False | XLOC_003072 |
| TCONS_00005631 | other | upstream | 354503 | 44009952 ~ 44015739 (-) | True | XLOC_003072 |
