RNA id: TU415299


Basic Information

Item Value
RNA id TU415299
length 430
RNA type TUCP
GC content 0.51
exon number 2
gene id G364103
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1452257 ~ 1501547 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTTGTTGGGTGCGGTTAGGGTGAGGATGCCATCTCCCCTTCACTGTGGATCGAGATCTGAACCAAACGCAACCCAATTTTGGGTTTCTCTTCAAAGCCAGCTGGTCTGGCTTGATTACTTTTCCTTAGCCTTTTTTTGACATATTAACAATCTTTTTTCTTTTTCTACAAAGACTGACCCACAGCAGGTGCTGGAGGGTTGACCTTCCTGGAGAAGAACATTATCGGACTGGTGCCAAAACAAAGGACCTGAAAGCCTCAAAAACCCATTTGATGGAGACACAAAAGCAGTGAAGATTCAGAGGGAGAAGATAGTGAAGTTGAAACTAAAGGTTATGAGCAAGTGATTGGAACGGATGCCGGAGTCTTTGAAATAAGAGGAACAAGAAAAGAGGAAAGACTGCATTGAGGATCGGAGAGAGCGAGCGAGAGAGGAAGAAAGACGAGTGTGTACAGTACTTTTGGAATAGGAAGGAATACCAGGCCGAAATAATGGGGAGGAAAAAGATTCAGATTGCGCGGATAATGGACGAACGCAACAGACAGGTTACGTTTACAAAGAGGAAGTTTGGACTAATGAAAAAGGCCTATGAGCTGAGCGTTCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACAGCACTAATAAACTGTTCCAGTACGCCAGCACCGACATGGACAAAGTTCTGCTTAAATACACTGAGTACAATGAGCCCCATGAGAGCCGGACGAATTCGGACATCGTGGAGACTCTGAGGAAGAAGGGTCTAAATGGCTGTGACAGTCCTGATATTGATGCTGAAGATTCAGGCCACAGTCCAGAATCGGAGGACAAATATCGCAAAATCAACGAGGACATTGACCTGATGATCAGCAGGCAGAGACTGTGTGCCATCCCCCAGTCTAATTACGACATGCCCATCTCAATCCCTGTGAGCAACCCCAACAGCCTGATCTACAGCCACCCAGGAGCGTCCCTGGGCAACCCCAACCTGCTGCCGCTGGCCCACCCCTCCCTCCAGAGGAACAGCATGTCCCCTGGAGTGACCCACCGTCCCCCGAGTGCAGGCAACACAGGTGGCCTTATGGGTCCAGACCTCAGCAGCGGAGTGGGCACCAGTGCTGGAAACGGGTATGGAAACCACCGCAACTCCCCTGGTCTGCTGGTCTCTCCGGGGAGCATGAGTAAGAACATGCAGGCCAAGTCTCCTCCGCCCATGAGCATGAGCATGAGCAACCGCAAGCCCGACCTGCGCGTCCTGATCCCCCCCGGCTCAAAGAACACCATGCCCTCCATCAACCAGAGAATAAACAACTCCCAGTCCGCCCAGTCTCTGAGCACACCAGTGGTGTCTATAGCCACGCCCACTCTGCCAGGACAGGGAATGGGCGGCTACCCATCAGCCATCTCTACCTCATACGGTACAGGTGAGTGCTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415300 lncRNA downstream 2325 1452257 ~ 1452976 (-) False G364103
TU415313 lncRNA downstream 8329 1426023 ~ 1447805 (-) True G364112
TU415317 lncRNA downstream 18654 1358156 ~ 1437480 (-) True G364116
TU415316 lncRNA downstream 21968 1358463 ~ 1434166 (-) True G364115
TU415265 lncRNA downstream 120199 1254047 ~ 1335935 (-) True G364076
TU415402 lncRNA upstream 164383 1665930 ~ 1666140 (-) True G364200
TU415309 lncRNA upstream 167843 1669390 ~ 1671108 (-) False G364109
TU415310 lncRNA upstream 167885 1669432 ~ 1671108 (-) False G364109
TU415308 lncRNA upstream 167905 1669452 ~ 1671108 (-) True G364109
TU415433 lncRNA upstream 277663 1779210 ~ 1789155 (-) False G364229
CI01000158_01410134_01419385.mRNA mRNA downstream 36469 1409995 ~ 1419665 (-) True CI01000158_01410134_01419385
CI01000158_01366017_01386733.mRNA mRNA downstream 69401 1365460 ~ 1386733 (-) True CI01000158_01366017_01386733
CI01000158_01341073_01343685.mRNA mRNA downstream 112099 1341073 ~ 1344035 (-) True CI01000158_01341073_01343685
CI01000158_01339302_01340074.mRNA mRNA downstream 116060 1339236 ~ 1340074 (-) True CI01000158_01339302_01340074
CI01000158_01262724_01264911.mRNA mRNA downstream 191223 1262005 ~ 1264911 (-) False CI01000158_01262724_01264911
CI01000158_01534561_01537689.mRNA mRNA upstream 32925 1534472 ~ 1538085 (-) True CI01000158_01534561_01537689
CI01000158_01561252_01564385.mRNA mRNA upstream 59705 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
CI01000158_01595127_01599555.mRNA mRNA upstream 93413 1594960 ~ 1600310 (-) True CI01000158_01595127_01599555
CI01000158_01602975_01638158.mRNA mRNA upstream 101375 1602922 ~ 1638158 (-) True CI01000158_01602975_01638158
CI01000158_01641190_01654617.mRNA mRNA upstream 139537 1641084 ~ 1654617 (-) True CI01000158_01641190_01654617
TU414877 other downstream 733622 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1140745 314404 ~ 315389 (-) True G363736
TU415405 other upstream 186419 1687966 ~ 1688828 (-) True G364203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005612 False 4285 mRNA 0.45 11 NC_007121.7 43547440 ~ 43655449 (-)
bowfin (Amia calva) AMCG00005940 True 1999 mRNA 0.56 8 CM030142.1 13266382 ~ 13273509 (+)