RNA id: TU415313


Basic Information

Item Value
RNA id TU415313
length 3044
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G364112
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1426023 ~ 1447805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTCGAGCGCAGGCAGCACGTGAGGAAGTTCTGCTCTTCCCTCACACCTTCATCCTGTCTGTGGATGGAATAAGACCGTTTCAAACGAAGGTGCCTCGCGCATCTTTAGCAAACATGTCGTAGAAGGATTTCGAGGATGTGATTTCTAATCGAGGATGTTCGTTTGTTCACATCCAGATGACTGTTTTTTGGTGCCATGGGGAGTCCAAAGAGAATAGGCAGCTGGAGCTCGGAGACGCCTGCAGGAGGAAGTGGAGGCAGCGCTGCCTCGTGAGGCTGATGCAACATGAGGATTGGCAGACAAATGAAGGATGATAAAGGAATCATGGGAAGGTTCTGATCTGGATACTTTCATATCACTTCAGTAAGAGCTCACAGATCATCTTACGAAGATGGTTCAATCACAAGGGGTAAAATATTTAATATAAATAAAAATTCTACATATAACATGTATATATGCGTGTGTGTGTTTGTCTGTAAAAATATTTGCGCATTTTTAAATAAAAACTGATATTTGATCAAAATATGTTTGTTTCTTTTTTATGTCACTCTTCGGTGTGACAGCCCAAATATCACACATCATAAGAGCATGTCAGTTTTCATGAATGAATGATATGAATTCATACTTCAGTATACATTGTATGTTACAAAAAAACTGAATGAAACAAGCTTTTAGTTTGCCTTACAAGCAGGTAAACTTTTTATTTATTTTTATTGCTCATTATAAGCAGGTGGTTTTAGGGGGAGGGGCATTCTCATATTAGAGAGTGTTTGATTGGTCAAAAATTTGCATATGACCCTGTAAAGACATTAATATTACTAAAAGATTAATATTAATATAAGAGAAAAATTCAATATGTGTATACCCGCTAAATGTTTTTGGGGCTCTTTAAGCTTTGAAAAATGTATTTCAAATTGTTCAGCAAATAAAATATTTTTTTTTTTACATCAAACTTTTAGAAACATGACTGTGTTGTGGTAGAGAAGATGGTGGGGAATCTACATTCTGACTAAAATATGTTGGAAAACCAAAGCTATTCAAAATACTGAGATAATTAGGAGATAATAGGCCTGAGATAATTAACACAACATTATGAATTATTAAGCAATATCAGCACCATTGAGTTGAGAGGGGTGCTCAGGCTCTAGTGTCTGGTCAGTATGTGGTGTTGTGAGTGGACACTGGTCCTCGTGTTAACAGCCTCCTCTCATCCTCTCAGGAGGCTCTTGTTAGACGAGGTGCCGCTGAAATTAATTAGCGTGATTCACAATCTACTCCACAGCCTGGAGGTGAGCAGGACTGTCATGTCTCTTTGTAAAGACTGTGCCTGTCCGGTGGAGCTTGTATTTACTCTCATTAAATTCTAAACAAGCCAATAGTGTTTAAATAACCAGCAGACGTTAACAATGCACTTCCAGTAATTAGTTTACAACTCTTAAAAATGGAGAAGCCAGCAGTGGGCAGTACATTAGCTGTCTCAGGACAAATATGAGCATTTATTTTTTTCTGCACTATTGCAATAATTATGTTTATCTGGTTAAAGTGCCCCTATTATGTTTTTTTTCGGATATAACCTTTCATGTAGTGGGTGATATAGCTGTTTGTAAATGTAAAATGTCTGTAAAGTTTCAAAGATGAAAGTGCATGATAAATGGAGTTATTTTCTCTCAAAAGAAACAACAGATTCTGAACTGCCTGAAACGAGTCATCAGTAATTCCTGCACAAACCTGTGTAGGTTTGTAACAAATTTGCATAATGCCAGTCTGTAATCTTCACTGGCTGCCCACGAACGACCTCTACTTTGCCCCGCCTTCAAACACTGTAGTTGTAGCTGAGACTGGAAGAGTTTAGCTTGTGTTGTCGATATGTCGAGAAGTTGCTGTTTTCTGCACTGAGAAAGTGAATCCAATACATGCAATTCCAAAAGATGAGGACTCACGCTGCAATTTATACTGTAAAACCATCATGGCGATGTCATTGTCACTGTTCGTTGTGTAATTCAGTTATGGTAATGGTCGTTTAGTTTCTGGCATGTTCTGTAAGCTGTCGACCAATCACAAAACTGGGCCATCTGACCAATCAGAGCAGAGCAGGCTCTGCGAAAGGAGGGGTTTAGTGCTAACAAACCATTTCAGACACTGTGAGAAAAGAGCTGGTACTGCAATTATGAGAAAATTAGTGTTTTTGACTTTGGATGAATGTAAACCTACTGTAGGAGGCTTTAGACTGCCTTTAAAATAGCATAATACACATTAAAAGATATTCTTTGTGTGTGAGGCAAATTCCAAACATAATCGCTTATGTATATTGGCTTGGTGTAAATTCTGACTACATGAACTGTCCAAATGTTACCGGTTGTTTCCTGTGTCCATGTTCTCCATGCATGACCCTTATATGTACTTAGGTTCATGAAACCCTTCTATGTTGACACTGAACATTCACACTTAAAAAAGGTTCAAGAAATGTTTTGATGTTCCTGATCATTTTTATACCGTAAGTCTACACAACATGCAAAGTATGTGAAACAAGTTTGGGGAGAGTTTATAGATAAGTGTCCTACCGGAATTTGCTGTTATCCTGGATGTGTGTTAGCATTGTGGCACTTCATATTACAAAGAAGGTAGTGCCTGATGATTACAAGTCATGTTTCTCTATGCTTGTTAATTATGTCACATTGATGGGTTAACCACATATAATAAAAAAAAGTGATATTAAATACTTTTTTTATGTTTTTTTAACAAACACACACAAACACACGCACACACAGTAACCTATATGGTAAAATAATATATTTTTAAAAATGTAGTTTTACTTTTAGAATTTTTTTGGGGAGAAAATATATTTAATAACAAGGTATTATATATATGTATATCGAAGTTAACAGGCTAAAGGCAATAGAACTGGAGTGATTTCAACAGATTTAATAAACATTCACTTTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATCTATTACTCACCCTCATGCCGTTCCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415265 lncRNA downstream 90088 1254047 ~ 1335935 (-) True G364076
TU415133 lncRNA downstream 159440 1261130 ~ 1266583 (-) True G363957
TU415148 lncRNA downstream 211954 1204852 ~ 1214069 (-) True G363972
TU415209 lncRNA downstream 382767 1043002 ~ 1043256 (-) True G364030
TU415139 lncRNA downstream 429942 995019 ~ 996081 (-) True G363963
TU415300 lncRNA upstream 4452 1452257 ~ 1452976 (-) False G364103
TU415402 lncRNA upstream 218125 1665930 ~ 1666140 (-) True G364200
TU415309 lncRNA upstream 221585 1669390 ~ 1671108 (-) False G364109
TU415310 lncRNA upstream 221627 1669432 ~ 1671108 (-) False G364109
TU415308 lncRNA upstream 221647 1669452 ~ 1671108 (-) True G364109
CI01000158_01410134_01419385.mRNA mRNA downstream 6358 1409995 ~ 1419665 (-) True CI01000158_01410134_01419385
CI01000158_01366017_01386733.mRNA mRNA downstream 39290 1365460 ~ 1386733 (-) True CI01000158_01366017_01386733
CI01000158_01341073_01343685.mRNA mRNA downstream 81988 1341073 ~ 1344035 (-) True CI01000158_01341073_01343685
CI01000158_01339302_01340074.mRNA mRNA downstream 85949 1339236 ~ 1340074 (-) True CI01000158_01339302_01340074
CI01000158_01262724_01264911.mRNA mRNA downstream 161112 1262005 ~ 1264911 (-) False CI01000158_01262724_01264911
CI01000158_01453526_01476090.mRNA mRNA upstream 5477 1453282 ~ 1476090 (-) False CI01000158_01453526_01476090
CI01000158_01487198_01495799.mRNA mRNA upstream 38984 1486789 ~ 1495906 (-) False CI01000158_01487198_01495799
CI01000158_01534561_01537689.mRNA mRNA upstream 86667 1534472 ~ 1538085 (-) True CI01000158_01534561_01537689
CI01000158_01561252_01564385.mRNA mRNA upstream 113447 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
CI01000158_01595127_01599555.mRNA mRNA upstream 147155 1594960 ~ 1600310 (-) True CI01000158_01595127_01599555
TU414877 other downstream 703511 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1110634 314404 ~ 315389 (-) True G363736
TU415299 other upstream 8329 1479208 ~ 1501547 (-) True G364103
TU415405 other upstream 240161 1687966 ~ 1688828 (-) True G364203

Expression Profile