RNA id: CI01000158_01453526_01476090.mRNA


Basic Information

Item Value
RNA id CI01000158_01453526_01476090.mRNA
length 2065
RNA type mRNA
GC content 0.55
exon number 12
gene id CI01000158_01453526_01476090
representative False

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1453029 ~ 1476090 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAGTAGCACGATTAGCCCCCCCTCCACACCCACCCTTTCCCGTGTTGTGGTGGTGGAGCTCTCAGTGGATGTTCTGTGTGAGACGTCTTACCGTGCAGCAGATTCTCCGAAAAAAAACTTGCATGATTCTTTACAAAGGCAACACGCTCGCTCATATAAGGTTACGTTTACAAAGAGGAAGTTTGGACTAATGAAAAAGGCCTATGAGCTGAGCGTTCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACAGCACTAATAAACTGTTCCAGTACGCCAGCACCGACATGGACAAAGTTCTGCTTAAATACACTGAGTACAATGAGCCCCATGAGAGCCGGACGAATTCGGACATCGTGGAGTGTAACACCGTTCGGCAGGCCATTTGCAACGTTGACACATGCATTACAAGCAAAGCCCTGGGGTCAGACTTAGCTGGGATTCTGCTGGTTTTTTATGAGGCTGAGAGGGAAAACAGCATGGCTTGCCTCATGAGGGAAGAAACATCACGTCTCCACGAGGCAAATCTCATGGACACCCTGCCAAGCCAAGAGGAAACGAAGAGTTCATTTGATTACGTGACATCTCGTGGCATGCTCCTCTACACTTCCCAGACTGTTTCTGTCGGCTCATATCTGCCATCTGTTCTGCTATGTAAACTTGAAAACACGGGTACTGAGAGCATCAAAGGAGGTAAATTACCCAGAAGTCCCCAGTGTGGCATTTTCCAAACGTTGCCCAGCTGCTGTGGTCAGAGCAGCTGGTGGAAAGAACCCTGGAGGAGGGCCAGACAGTGCCACGCATTGGCCATGCGACCTGCCGCAGGAACGGGGGCGTCCCTGATTGCTCACCCGTACGTCTCTAATAGGATTCCGCCTCTTTTACGGTCGGAATCAACTCTGAGGAAGAAGGGTCTAAATGGCTGTGACAGTCCTGATATTGATGCTGAAGATTCAGGCCACAGTCCAGAATCGGAGGACAAATATCGCAAAATCAACGAGGACATTGACCTGATGATCAGCAGGCAGAGACTGTGTGCCATCCCCCAGTCTAATTACGACATGCCCATCTCAATCCCTGTGAGCAACCCCAACAGCCTGATCTACAGCCACCCAGGAGCGTCCCTGGGCAACCCCAACCTGCTGCCGCTGGCCCACCCCTCCCTCCAGAGGAACAGCATGTCCCCTGGAGTGACCCACCGTCCCCCGAGTGCAGGCAACACAGGTGGCCTTATGGGTCCAGACCTCAGCAGCGGAGTGGGCACCAGTGCTGGAAACGGGTATGGAAACCACCGCAACTCCCCTGGTCTGCTGGTCTCTCCGGGGAGCATGAGTAAGAACATGCAGGCCAAGTCTCCTCCGCCCATGAGCATGAGCATGAGCAACCGCAAGCCCGACCTGCGCGTCCTGATCCCCCCCGGCTCAAAGAACACCATGCCCTCCATCTCGGAGGATGTTGACATGTTGCTGAACCAGAGAATAAACAACTCCCAGTCCGCCCAGTCTCTGAGCACACCAGTGGTGTCTATAGCCACGCCCACTCTGCCAGGACAGGGAATGGGCGGCTACCCATCAGCCATCTCTACCTCATACGGTACAGGAACTGCACCAGCACACAGTTATGTCAGAGCTCCACCCTCTCGCTGCCGTCCAATCAGAGCCTGCACATCAAATCCGAACCCGTCTCTCCTCCCCGAGACCGGGCGGGAGGCACTCCGGGCGGCTACGCTCATCCTCTGCCCCCTCCTCCGCCCCAGCCGGCGTCCCAGCAGGGTCAGCTACGGCAGGATGCGGGCCGCTCCCCGGTCGACAGCCTGAGCAGCTGCGGCAGCTCGTACGAGGGCAGCGACCGTGAGGAGCACCGAGCCGACTTCCATTCGCCCATGGGACTGCTGAGACCCTCTCAGGACGAGCGGCACAGCCCGTCCGTCAAGCGCATGCGTCTGTCCGAGGGCTGGGCCTCGTGATTGCGCGGCCTGTGCTGGCTTTTCTATGTGGAGATTTCACTTTAGTATTATTATATTTGTTTCTGCGGAGTGTGAGTGCTACATCAAGTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415313 lncRNA downstream 5477 1426023 ~ 1447805 (-) True G364112
TU415317 lncRNA downstream 15802 1358156 ~ 1437480 (-) True G364116
TU415316 lncRNA downstream 19116 1358463 ~ 1434166 (-) True G364115
TU415265 lncRNA downstream 117347 1254047 ~ 1335935 (-) True G364076
TU415133 lncRNA downstream 186699 1261130 ~ 1266583 (-) True G363957
TU415402 lncRNA upstream 189840 1665930 ~ 1666140 (-) True G364200
TU415309 lncRNA upstream 193300 1669390 ~ 1671108 (-) False G364109
TU415310 lncRNA upstream 193342 1669432 ~ 1671108 (-) False G364109
TU415308 lncRNA upstream 193362 1669452 ~ 1671108 (-) True G364109
TU415433 lncRNA upstream 303120 1779210 ~ 1789155 (-) False G364229
CI01000158_01410134_01419385.mRNA mRNA downstream 33617 1409995 ~ 1419665 (-) True CI01000158_01410134_01419385
CI01000158_01366017_01386733.mRNA mRNA downstream 66549 1365460 ~ 1386733 (-) True CI01000158_01366017_01386733
CI01000158_01341073_01343685.mRNA mRNA downstream 109247 1341073 ~ 1344035 (-) True CI01000158_01341073_01343685
CI01000158_01339302_01340074.mRNA mRNA downstream 113208 1339236 ~ 1340074 (-) True CI01000158_01339302_01340074
CI01000158_01262724_01264911.mRNA mRNA downstream 188371 1262005 ~ 1264911 (-) False CI01000158_01262724_01264911
CI01000158_01487198_01495799.mRNA mRNA upstream 10699 1486789 ~ 1495906 (-) False CI01000158_01487198_01495799
CI01000158_01534561_01537689.mRNA mRNA upstream 58382 1534472 ~ 1538085 (-) True CI01000158_01534561_01537689
CI01000158_01561252_01564385.mRNA mRNA upstream 85162 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
CI01000158_01595127_01599555.mRNA mRNA upstream 118870 1594960 ~ 1600310 (-) True CI01000158_01595127_01599555
CI01000158_01602975_01638158.mRNA mRNA upstream 126832 1602922 ~ 1638158 (-) True CI01000158_01602975_01638158
TU414877 other downstream 730770 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1137893 314404 ~ 315389 (-) True G363736
TU415405 other upstream 211876 1687966 ~ 1688828 (-) True G364203

Expression Profile