RNA id: TU415316


Basic Information

Item Value
RNA id TU415316
length 1169
lncRNA type read_through
GC content 0.36
exon number 2
gene id G364115
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1358463 ~ 1434166 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCACCTTTTGACTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTTTAATTTCCAACAACCTTTGGGTTCATTTTAATCCAGATATATAGTCATTTCTAAACAATAGTTGAGATAAATAAAACTGCCCAGCACGTCGGGCAAACATTTAACCCAAATGCTGGGTTTGTCCATTTTCAACCCAACTTGGGGTGTTTATAACCCAGCATTTTTAGAGTGTACTATTAGGCAATATTCAATAAACTATAAAATGTGACCTATTAATAATAAAAACCTCAGTAAACTGACAAGTAAAACTATTAAAGCTTCACTGTGTACTTTTTTTGTTAAAAACGAACAAAATGTCCTTAATGAGAGAGCTCATTAAAAATCCGTCTTTCAAAAAGTGTTTTTACCTCACCCCGATTCATTATGGTAAGCCTATAATATTATTTTAGAGATGTCGGGGCGGATTTGCCGGGAATTTGCATACTTCCATCATTTACGTCATGTCCGTCTTGTCATGTAAATAAAGAAAAGAGATCCGGTTATAGCGCATGTACGGTCCAGTTGTGTGGAAGGTGTTTTAATGTCGCACACGTACAGTAATTACCAAAAGAAGAGTCCTCCGCAAGTAACTTGCAGTTTATGGTTCAACCACTAGAGGGCCGTTACAGGTAACGTTACATAAATTTGCATTGACAGAATGCTGTGTCGGCATATAGCGGTTGTTTTACATCGACTTCGAACATGGTCTTTAAATTTCAATTTATTTAACATGATGGTTTAACAAAGTAGGTGTAAAAGTAAAACTGTAAAAGTACGTCGGAGGGTGAGGGTGGGATCATGTTAAGTGAAATCAAGGTAAAAGATGACTTCTTATCAGAGTTTTCTCCATTTAGTTTTTATGTGCTTATGTTAGCAAGTGCTGCAGTTTTAGATTAGCTGTATCTTATGCTTTCCAACATGACTTTCAAAAGCTCTCCTTTCACTTGCAGCATTTGTTCTGAATGGTATTAACTCATATACATATTTTTCATATTTGTAATGAAGTAGAAGGTCCATAGAAGGATGACTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTCTTGTACAAATAAGATCAAATATTTGCTAAACAAAATGATTACAGAACCAGCAGAGATCTCTACAGCTGGACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415265 lncRNA downstream 22528 1254047 ~ 1335935 (-) True G364076
TU415133 lncRNA downstream 91880 1261130 ~ 1266583 (-) True G363957
TU415148 lncRNA downstream 144394 1204852 ~ 1214069 (-) True G363972
TU415209 lncRNA downstream 315207 1043002 ~ 1043256 (-) True G364030
TU415139 lncRNA downstream 362382 995019 ~ 996081 (-) True G363963
TU415300 lncRNA upstream 18091 1452257 ~ 1452976 (-) False G364103
TU415402 lncRNA upstream 231764 1665930 ~ 1666140 (-) True G364200
TU415309 lncRNA upstream 235224 1669390 ~ 1671108 (-) False G364109
TU415310 lncRNA upstream 235266 1669432 ~ 1671108 (-) False G364109
TU415308 lncRNA upstream 235286 1669452 ~ 1671108 (-) True G364109
CI01000158_01341073_01343685.mRNA mRNA downstream 14428 1341073 ~ 1344035 (-) True CI01000158_01341073_01343685
CI01000158_01339302_01340074.mRNA mRNA downstream 18389 1339236 ~ 1340074 (-) True CI01000158_01339302_01340074
CI01000158_01262724_01264911.mRNA mRNA downstream 93552 1262005 ~ 1264911 (-) False CI01000158_01262724_01264911
CI01000158_01247736_01251443.mRNA mRNA downstream 107005 1247559 ~ 1251458 (-) True CI01000158_01247736_01251443
CI01000158_01192157_01194797.mRNA mRNA downstream 163666 1192144 ~ 1194797 (-) True CI01000158_01192157_01194797
CI01000158_01453526_01476090.mRNA mRNA upstream 19116 1453282 ~ 1476090 (-) False CI01000158_01453526_01476090
CI01000158_01487198_01495799.mRNA mRNA upstream 52623 1486789 ~ 1495906 (-) False CI01000158_01487198_01495799
CI01000158_01534561_01537689.mRNA mRNA upstream 100306 1534472 ~ 1538085 (-) True CI01000158_01534561_01537689
CI01000158_01561252_01564385.mRNA mRNA upstream 127086 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
CI01000158_01595127_01599555.mRNA mRNA upstream 160794 1594960 ~ 1600310 (-) True CI01000158_01595127_01599555
TU414877 other downstream 635951 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1043074 314404 ~ 315389 (-) True G363736
TU415299 other upstream 21968 1479208 ~ 1501547 (-) True G364103
TU415405 other upstream 253800 1687966 ~ 1688828 (-) True G364203

Expression Profile