RNA id: TCONS_00006166


Basic Information

Item Value
RNA id TCONS_00006166
length 1497
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_003123
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1512571 ~ 1520946 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAGCACAGTACAGTAAACATGGCTGAACGCGGTAGTGAATCTCCGGTTGGTAATGAAGTAAACCGTGTGTCTAAATCAAGTGAACCAGACCTCAGAAGTGTCCTGGTTACAAGTGTGTTAAATTTAGAGAAGCTCGACACCGACCTGTACAGAGGGACACACCACTGGGTCCCCCGCACTAAGCGGCTCTTCGGGGGCCAGATTGTGGGACAGGCTCTCGTAGCTGCAGCCAATTCAGTTGCTGAACACCTCTATGCTCATTCACTGCACTGCTACTTTGTCAGAGCAGGGGACCCGAAGGTGCCGGTGCTGTACCAGGTGGAGAGGACGCGCGACGGCCGCAGTTTTTGTGTGCGATCGGTGAAGGCCATCCAGCACGGTCAGCCCATTCTCATCCTCCAGGCATCGTTTCACATGCAGCAGCCCAGTCCTCTGGAGCACCAGTTCAGCATGCCCAGCGTCCCTCCGCCAGACACTCTGCTGACCGTGGAGGAGCTCATACAGCGCTTCCTCAGtaaacCGGATCTGGCAGACAACACTCGGCAGGGTCTGAATAAAATACGAGCGGATGAAGTTCCGATAGAGATCAAGCCAGTCAATCCACCGGATTTCTTCAGACGTGTTGCTATGGAGGCAAAAACACTGATCTGGGTGCGAGCCAGAGGATATATAGGACCTGGCGATATGAAACTGCACCGCTGTGTGGCAGCGTATGTGTCCGACTACGCTTTCCTGGGGACGGCGCTGTTACCGTACCCAAACTACAGGTCGCAGTTCTCAGCCTCTCTGGATCACGCCATGTGGTTTCACAGCACGTTCAGAGCAGACGAGTGGATGCTGTACGAGTGTGAAAGCCCCTGGTCAGGAGGCAGCAGAGGCTTCGTCCAGGGCCGCTTGTGGAGACAGGATGGAGTTCTGGCAGCTTCCTGCGCACAAGAGGGAGTGATACGAGTCAAGGAGGTGTCGCAGAGTAAATTATAGAGAAATACTAATATACATCTACTATACCCTGAGATGCCTTACAATAGGTGCCAGACTGACTAGTTAATGCTAATTAATATATACattactaatatgaacaaacaatgaacaatatgcAATATTTATCACAGTGTTTGTTAACCTTTGATAATGAAAATACAGCTATTTATTATTAGTTCCTGTTAGCtcttaatgcattaactaatgttaacaagcacagctGTGGAtcctaataatgcattagtagatgttgaactgtgattaataaatgctgtatgggtattgttcattcttagttcatgttagtaaatacatataaatacaaatgaagtatttaatataattatgtttGCTGGTGCTGTAATGTAATTGCAGTTGAAGTTCTGTCCAACAAAAAAACTTGACTGTAATATTGCAAATTGTATAAGTGGTCCACTTTATAAGCAGGCACTTTATTGATAATTTATTAAGTAACACTGGAATCTGTGGATGTGTTGAACAAGACTAAAAAAC

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0047617 acyl-CoA hydrolase activity molecular_function

KEGG:

id description
ko00120 Primary bile acid biosynthesis
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-041010-174 Predicted to enable acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid catabolic process. Predicted to be active in peroxisomal matrix. Orthologous to human ACOT8 (acyl-CoA thioesterase 8).

Ensembl:

ensembl_id ENSDART00000027386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006160 lncRNA upstream 794196 714718 ~ 718375 (+) True XLOC_003117
TCONS_00008508 lncRNA upstream 968377 543348 ~ 544194 (+) True XLOC_003112
TCONS_00006151 lncRNA upstream 972964 537022 ~ 539607 (+) True XLOC_003111
TCONS_00008507 lncRNA upstream 1007742 498446 ~ 504829 (+) False XLOC_003109
TCONS_00006167 lncRNA downstream 1181 1522127 ~ 1524414 (+) False XLOC_003124
TCONS_00006170 lncRNA downstream 3964 1524910 ~ 1526754 (+) True XLOC_003124
TCONS_00008509 lncRNA downstream 92454 1613400 ~ 1615142 (+) True XLOC_003129
TCONS_00008376 lncRNA downstream 414738 1935684 ~ 1937142 (+) False XLOC_003132
TCONS_00008510 lncRNA downstream 414744 1935690 ~ 1997410 (+) False XLOC_003132
TCONS_00006165 mRNA upstream 100215 1409622 ~ 1412356 (+) True XLOC_003122
TCONS_00006164 mRNA upstream 697355 807153 ~ 815216 (+) True XLOC_003121
TCONS_00006163 mRNA upstream 722267 779754 ~ 790304 (+) True XLOC_003120
TCONS_00006162 mRNA upstream 740112 769623 ~ 772459 (+) True XLOC_003119
TCONS_00006159 mRNA upstream 793823 714386 ~ 718748 (+) False XLOC_003117
TCONS_00006168 mRNA downstream 1190 1522136 ~ 1530865 (+) False XLOC_003124
TCONS_00006171 mRNA downstream 12151 1533097 ~ 1546015 (+) True XLOC_003125
TCONS_00006173 mRNA downstream 30657 1551603 ~ 1574656 (+) False XLOC_003127
TCONS_00006174 mRNA downstream 30660 1551606 ~ 1574656 (+) False XLOC_003127
TCONS_00006175 mRNA downstream 30717 1551663 ~ 1574656 (+) False XLOC_003127
TCONS_00006161 other upstream 781648 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 1141131 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006169 other downstream 1233 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006172 other downstream 25171 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006199 other downstream 669675 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006215 other downstream 1112845 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006226 other downstream 1224118 2745064 ~ 2747797 (+) True XLOC_003154

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05857113_05861024.mRNA True 2551 mRNA 0.43 6 CI01000057 5856980 ~ 5862479 (-)