RNA id: TCONS_00006228


Basic Information

Item Value
RNA id TCONS_00006228
length 781
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_003156
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2827553 ~ 2828675 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaaaatgagatgctaatggtctaatccgattcaatgatctatgctaagctaagctataagTGCTTTTTTGAgtgggatgctaatggtctaatccgattcaatgatctatgctaagctataaGTGCTTTtttagtgagatgctaatggtctaattcgattcaatgatttatgctaaggtaaaaagtgcttttttttgagatgctaatggtctaatcagattcaatgatttatgctaagctaagctaaaagtgctctctcCAGACTCGGAAAAtggctaaatggattcaaaaatgctaaaactcaacaGTCTAAATCAAGGGGAGGTgtaaatgaaaatttattttgaaaaaaaggtgGAGTGCTCCTTTAATACTTCTCCAAAATCTGTAACGAACTATCATGTTTAGCATAACTCGTTGTATAAGTAATACTGATGTTTATTATGTGAATGCCAGAGAAGAGTTTTGATCTCGAGGTTATTTTCATTACAGAGTCTTAAAATCGAAATGTTCAAATGTTGTACATACTCATACCAAAGAGTTGGTTTCCTCACGCGATCAGTGTTGTACAGTCTCCAGTCCCATTCTTTGTGTACAGTTTTGCTATGAATGACTGGCTTAAGGTAAACGTTTGAGAATCACTGATTCGGAGATGCCTTGAAATGAATTCGCGATGATCTGTGCAACTTTTGGAGCTTTCTCGTTTTCACCACAGCATTGCTTTGAGCATTAGGAGTTAGTCTGTGGATGAAGTGCTCTGTTGCAGTTTAACTGAACTT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164693

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006224 lncRNA upstream 97115 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006213 lncRNA upstream 211530 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00008515 lncRNA upstream 507198 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 507198 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 512767 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008381 lncRNA downstream 101504 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 374812 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 502438 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006252 lncRNA downstream 757354 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008518 lncRNA downstream 787075 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00006227 mRNA upstream 991 2763168 ~ 2826562 (+) True XLOC_003155
TCONS_00006223 mRNA upstream 67180 2710547 ~ 2760373 (+) False XLOC_003154
TCONS_00006225 mRNA upstream 69494 2710569 ~ 2758059 (+) False XLOC_003154
TCONS_00006222 mRNA upstream 70977 2710530 ~ 2756576 (+) False XLOC_003154
TCONS_00006221 mRNA upstream 120525 2699951 ~ 2707028 (+) True XLOC_003153
TCONS_00006229 mRNA downstream 26755 2855430 ~ 2974067 (+) False XLOC_003157
TCONS_00006230 mRNA downstream 73917 2902592 ~ 2934138 (+) False XLOC_003157
TCONS_00006231 mRNA downstream 176861 3005536 ~ 3195784 (+) False XLOC_003158
TCONS_00006232 mRNA downstream 177449 3006124 ~ 3195882 (+) True XLOC_003158
TCONS_00006235 mRNA downstream 383151 3211826 ~ 3249117 (+) False XLOC_003161
TCONS_00006226 other upstream 79756 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 178159 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 636823 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1281322 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1298226 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006233 other downstream 348011 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 670515 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1137052 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2653078 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 2702768 5531443 ~ 5531576 (+) True XLOC_003178

Expression Profile

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