RNA id: TCONS_00006268


Basic Information

Item Value
RNA id TCONS_00006268
length 1679
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_003183
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5817202 ~ 5836286 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTttatgttctgattggctaaagctcGCTTACGTTTGATTCAGTTTAAACTGGGGTCAGGCTGTCAGGCTGTCTGGAAGTGAAAACGGCGAGATCAAACTGATGATTTAATTCATGGAGATTGATGCGATTCTTGTAATTTTACGGTTTCCCTGAGAGTTTGAAGTCTCCGTGTCTGTTTATCCGGTCTTTTTAAATCAGGATTAAAGGAAAATGAGGCTTCGCTCGAGAACTGTTTTAAACGAAAACACAACGACACCGATTCGCCGCCGCCGAGCCGCTCCGGAGACACCGAGCCGGGAGAACGAGCCGGTCCAGAACCAGGATGACCCAGAGGTTCTTCAAGACTGCTCAAATCTGGACCCTGATGATGTCCCAACAGCATCCAAACGTCCACGGAGGAGAAGAAAAGCTTTATCAGCTGTTGTGAATAAAGAGTCAGGTTTCAAGACTCCAGTCCATCACCTCCGGGAAAGACATTCCTCATTGAATCCAGCCGCTCGGAGCCTTTACTCTCCTGCAGTTCACTTTCTCACCCCCCCAAGAGACCGTGAGCAGCCAAACACTGGTCCCCTCTTCAGTCCTGAACACCGTGTGTTTGGTTACAGTGCTGCCAGTCCTCTTTCAGAAGACGAAGAGAATGAGGAAGTGTTTAGTCCTTTCACATTTATCAAAAACATTCCCAACCGTTCCCAACAGTCCAGGCCGGTGTCTGCAGTGCGGGACATCCCACCAAAGACGAGGAGCACACCTGCTGCCACCCTGGTGCTGGATTTGGATGAAACCCTGGTGTTCAGTTCACTCAATGTGATCCCTGATGCAGAATACACCTTCAATACACGCTTTCAAGACCACAAGTATAAGGTCTACGTAATCCTCAGACCACATGTGAGAGAGTTTCTACAAGCCATGACAAAACATTTTGAGATGTTTGTTTATACGTCTGCAAAAAAGGAGTATGCAGAAAAGATTGTAGATATTTTGGACCCTAATAAAAAGCTCTTCAGGCATCGTTTGTATCAGGACGACTGCGCCTGTGTGCTTGGACACTACATTAAAGATTTGACCATTCTAGAAAGAGACTTGTCAAAGACGGTCATCCTGGACAACGCCCCTCACACTTTCCCATACCACCTGATGAATATGATTCCTATAAAGAGCTGGATTGGAGATCAAGAGGACCGTGAGCTGCAAAAGCTCATTCCATACATGGAGAAACTAGTCCACGCGGATGACTTCAGAAATGTTTTAAAGAAGAGAACCGACCACTTCCACAGGCTGCTCTCTGAGGACTAAACCCTGGATTAGgtgtaaatacatgtacagcCATCCTAATAAATGCAGTAAAATTGCCCATCTACAAGCTAGCTAAGGCTAAATGTGTAGTATGGTGATTCACCCTGGTATAACCAAAGTGTTTGTTTGATAGGCGATAGTGTTAATGCTACCTTTATTCACCCTGGTGATCAGCTGGTGTTCTGACCCATTTTGAAGATCAGGACTAGAATCCTGCCTTTAATTTATTCAACTATGAGATATTGTACAGGTGCCActgaaagtgtgtgttttttacaCACTCAACTCTTGTTTTCAATGTGCGTTGCACTCAGAGCTCTAGTTTTAAAAGTCATTTAGGATGATTTTCGGTAACCAATAAATTTTTGTTTCACTGAAGTAA

Function

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-56 Predicted to enable phosphatase activity.

Ensembl:

ensembl_id ENSDART00000126084

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008384 lncRNA upstream 214481 5602340 ~ 5602721 (+) True XLOC_003180
TCONS_00008383 lncRNA upstream 327494 5486647 ~ 5489708 (+) True XLOC_003175
TCONS_00008382 lncRNA upstream 339519 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006257 lncRNA upstream 1730351 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008519 lncRNA upstream 2034077 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00006271 lncRNA downstream 6391 5842677 ~ 5848072 (+) True XLOC_003184
TCONS_00006276 lncRNA downstream 51400 5887686 ~ 5889156 (+) True XLOC_003185
TCONS_00008520 lncRNA downstream 118979 5955265 ~ 5966389 (+) False XLOC_003187
TCONS_00008521 lncRNA downstream 119000 5955286 ~ 5966389 (+) False XLOC_003187
TCONS_00008523 lncRNA downstream 119001 5955287 ~ 5966389 (+) False XLOC_003187
TCONS_00006267 mRNA upstream 6244 5681762 ~ 5810958 (+) True XLOC_003182
TCONS_00006266 mRNA upstream 142279 5666325 ~ 5674923 (+) True XLOC_003181
TCONS_00006265 mRNA upstream 157521 5588122 ~ 5659681 (+) True XLOC_003179
TCONS_00006264 mRNA upstream 229050 5565082 ~ 5588152 (+) False XLOC_003179
TCONS_00006263 mRNA upstream 233375 5565082 ~ 5583827 (+) False XLOC_003179
TCONS_00006269 mRNA downstream 6346 5842632 ~ 5852715 (+) False XLOC_003184
TCONS_00006270 mRNA downstream 6377 5842663 ~ 5852595 (+) False XLOC_003184
TCONS_00006272 mRNA downstream 44276 5880562 ~ 5923047 (+) False XLOC_003185
TCONS_00006274 mRNA downstream 44296 5880582 ~ 5923047 (+) False XLOC_003185
TCONS_00006275 mRNA downstream 44341 5880627 ~ 5925517 (+) False XLOC_003185
TCONS_00006262 other upstream 285626 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 335318 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006254 other upstream 1848893 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006246 other upstream 2303094 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006233 other upstream 2640432 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006273 other downstream 44289 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006283 other downstream 197956 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006299 other downstream 300035 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006305 other downstream 372884 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other downstream 373625 6209911 ~ 6223299 (+) False XLOC_003195

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_03817584_03827165.mRNA True 1575 mRNA 0.44 10 CI01000057 3817026 ~ 3827165 (+)