RNA id: TCONS_00006380


Basic Information

Item Value
RNA id TCONS_00006380
length 2433
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_003233
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8565323 ~ 8682447 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTATTAGCAGCGATGAGGTCAACTTCCTGGTGTATAGATACCTGCAGGAGTCAGGGTTTTCCCACTCGGCCTTCACATTCGGCATTGAGAGCCACATCAGCCAGTCGAACATCAACGGCGCCTTGGTGCCCCCTGCTGCCCTAATCTCCATCATTCAGAAGGGCCTGCAGTACGTGGAGGCTGAAGTCAGCATCAATGAGGACGGCACTCTGTTCGATGGGCGGCCAATTGAATCACTGTCATTGATTGACGCGGTGATGCCCGATGTGGTACAGACCCGGCAGCAGGCGTACCGAGACAAACTGGCTCAGCAGCAGGCCGCCGCAGCGCCATCAGCAACCAGCGCTAACATGCAGGGGAATGCCAAAAACGGAGAAAACACCGCAAACGGAGAGGAGAACGGTGCTCACGCCTTACCTAATAACCATGCAGACATGATGGAGGTGGACGGGGATGTGGAGATCCCTCAGAATAAAGCCATGGTGCTTAGAGGTCACGAGTCAGAGGTCTTCATCTGCGCATGGAATCCCGTCAGTGATCTGCTCGCCTCTGGGTCAGGAGACTCAACGGCACGAATCTGGAATCTGAGCGAGAACAGCAGTAGTAGCTCCACACAGCTCGTCCTGAGGCACTGCATACGGGAAGGTGGCCAAGACGTGCCCAGCAACAAAGACGTCACATCGTTAGACTGGAACAGTGAAGGTACACTTTTAGCCACAGGCTCCTATGACGGCTTTGCAAGAATATGGACTAAAGATGGTAATCTGGCCAGCACCCTAGGTCAACATAAAGGTCCAATATTCGCGTTAAAGTGGAACAAAAAAGGAAACTTTATCCTCAGTGCCGGTGTTGATAAGACAACAATCATTTGGGATGCTCACACAGGGGAGGCCAAACAGCAGTTCCCGTTTCATTCAGcacCAGCTCTAGATGTGGATTGGCAGAGTAACAACACGTTTGCCTCCTGTAGCACAGACATGTGCATTCATGTGTGCAAACTGGGCCAGGACCGACCCATAAAGACATTTCAAGGACACACAAATGAAGTTAATGCAATCAAATGGGATCCGACTGGTAATTTGTTGGCGTCGTGTTCTGATGACATGACTCTGAAGATTTGGAGTATGAAACAGGACACTTGTGTTCATGATTTGCAAGCTCACAGCAAAGAAATCTATACTATCAAATGGAGCCCCACAGGTCCAGGAACCAACAACCCCAATGCCAATCTAATGCTGGCCAGTGCTTCCTTTGACTCCACTGTTCGGCTTTGGGATGTAGATCGAGGCATCTGCATCCACACACTAACCAAACACCAGGAGCCCGTGTACAGTGTGGCCTTCAGCCCTGACGGACGCCATCTAGCCAGCGGCTCTTTCGACAAGTGTGTCCACATCTGGAACACACAGACTGGTGCTTTAGTCCATAGCTACAGAGGGACAGGGGGCATTTTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTAGGAGCAAGTGCGTCGGACGGCTCTGTTTGTGTATTAGATCTGCGGAAATAGCGCTGCTTGCTGGAAGCCATGGACCGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCTCAAACTGCTACAGTCCCTAGTGAACCATGGCCAGCCActacagacaaacaaacacaagcacccTGACGCCACCGGCCGAGCGGAGAGGATGTGATTCCAACCAGAGACATTCAAATGACTTTTGTGAGGTGGAGAGCGAGCGATCGAGAGagaggaaaacaaacaaacaatataacagGAATAAAGACAAGAGGACTGGTATATGTACCAAATTTGGAAGATATTTTACTATTTGTTCTTCAAAACCAATCTCATCAAAATAAACGAACGAAAGGATTTTAATCTTTGTTGGTAGTTTCCGTTTCAGTGTGCAGACATATCAAGCATTTTCTTTTCCTCCTCCCCACCCcctctttctttatttctatCGCACATTTGATTTGGCGTCACGCCTGCATGATTTCAGGACTCATGTTTTCCTCTGTTTGACACACGAGTACAGTTATTTAGTCTTTTGGTACTGGATGTTTTGTGATTTTTTCAACAGTGTGGGGACATGAAAAAAAGCTATTTTCAATCTTTTTCTTGTTCtttggtttaattttttaatgctACGGTGTAACTGTCAACTCCCTTCCTGCCCCCTGAAAAAAGTGAGGTACATAAACCAAAACAACAGCACATTACAGGAAATGCATCTTCACTCATGCTAGTGTATTTAGTTGATAGATGTTCCCGCTACATTGAACACAAACAGTTAGTTCTTTTGGTCGAGAAAGCGAGGACTTTTGTCATGCATGCAGATTTAAAACAAAGACTTGCAATATTTGAATTCAACTTCCCAACttgttttaataattgtatttaatttaacgtTTTAAAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-314 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation and regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 41. Orthologous to human TBL1XR1 (TBL1X receptor 1).

Ensembl:

ensembl_id ENSDART00000169141

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006379 lncRNA upstream 79601 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00006368 lncRNA upstream 689128 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008547 lncRNA upstream 705612 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00008548 lncRNA upstream 705612 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00008388 lncRNA upstream 834086 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006381 lncRNA downstream 829086 9511533 ~ 9520179 (+) False XLOC_003236
TCONS_00006383 lncRNA downstream 829086 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00006382 lncRNA downstream 829086 9511533 ~ 9522073 (+) False XLOC_003236
TCONS_00008389 lncRNA downstream 836359 9518806 ~ 9522073 (+) False XLOC_003236
TCONS_00008550 lncRNA downstream 838297 9520744 ~ 9521759 (+) True XLOC_003236
TCONS_00006374 mRNA upstream 481013 8170948 ~ 8179145 (+) False XLOC_003232
TCONS_00006375 mRNA upstream 481209 8171068 ~ 8178949 (+) True XLOC_003232
TCONS_00006373 mRNA upstream 499009 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006371 mRNA upstream 502663 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA upstream 503123 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006386 mRNA downstream 1858811 10541258 ~ 10550377 (+) False XLOC_003240
TCONS_00006387 mRNA downstream 1865724 10548171 ~ 10550375 (+) True XLOC_003240
TCONS_00006388 mRNA downstream 2226736 10909183 ~ 10960394 (+) True XLOC_003242
TCONS_00006389 mRNA downstream 2292565 10975012 ~ 11020857 (+) False XLOC_003243
TCONS_00006390 mRNA downstream 2293034 10975481 ~ 10988549 (+) False XLOC_003243
TCONS_00006353 other upstream 1385780 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 1509252 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 1509518 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 1509792 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 1510076 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 1216066 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 2585443 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 2589487 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 2663356 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 2690439 11372886 ~ 11373182 (+) True XLOC_003255

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000056_00601216_00610322.mRNA True 2764 mRNA 0.46 14 CI01000056 600353 ~ 610405 (+)
bowfin (Amia calva) AMCG00009041 True 4286 mRNA 0.40 17 CM030126.1 21869612 ~ 22033107 (-)