RNA id: CI01000056_00601216_00610322.mRNA


Basic Information

Item Value
RNA id CI01000056_00601216_00610322.mRNA
length 2764
RNA type mRNA
GC content 0.46
exon number 14
gene id CI01000056_00601216_00610322
representative True

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 600353 ~ 610405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATGAGGATGTGATCTGGAATGGTGGACACAGAGGTCGTGAGGAAATGGGTCACTTTTCAGAATTGGCCCACTTGTGGTAACGCAGATTTTTGAGGTGGAACTGAAAATGTTTGTGCTCGGTGATGCTCTTTTCTGGAGGAAGTCCAATGTTGAGTGAAATTGAAATTCAGGCTTAATATAGTGTATTATTTAAATAAACTACCCAAAATTGTTTAGCAGTGTCCTTGAGAATCATTTTTTTTTTGTTTTTTTTTTTGCTTTCAATCACAAAGTGAACAATTTAACTGTGCAAGTACCAAATTTTTATTGTCAAATCTAGGTCACTTTTAATTTCAAGCAGATGTTCCTGTGCTACAAAATTAAGTGCATCTGTAAGTGCAAACTGACATTTTGTCAGCTCTGTAATGCCAAAATCACAATGAATTCAAGTGTCAAACACAAGTAAACAAAGGTATTCTGTAGTAGCCCTCATGTAAACATTTTCAGTGGCAGATGCTTTTACTGCTCTGCAGGTTTGGTGCAGCAGCGCCACCAAAGTGTAATGGATACTTTAGGTACTACAACTTGTTATTCAGCCATGCAGGGCTGTGAAGCCCTTGGTAACCTCTGGCAGCATAGTACGCACTCAGGTTCCTGCTGACAAAGAGAGTTTTATCCCCTTATTGCACTGTAAAAGAGTTTTTTTTATACACACTCTGAGTCCCTTGAGTGGAAGGCAGAAAGCCTGGCAATATCCATACCTCTTCTGTTGTTGTTTTTAGTGTCATTCTGTGAGATGGCTTTCTGATTTGTTTGTGTTCTTTCTCTCTCAGGCTTGTGTCCTGTGTGCTGACCTCATGGTGTAAGCAGGTGTGAAGATGAGTATTAGCAGCGATGAGGTCAACTTCCTGGTGTATAGATACCTGCAGGAGTCAGTGAGGGCGTTGTTTAAGGGAGCACACATGATACCCTCCACTGGAGAGAAAGTTGATCCAGCAAGCGTCACACTGAAGTGTTTATCATTCCCTCTGGCAGGGTTTTCCCACTCGGCCTTCACATTCGGCATTGAGAGCCACATCAGTCAGTCTAACATCAACGGCGCCCTAGTGCCCCCTGCTGCCCTGATTTCCATCATCCAGAAGGGCCTGCAGTATGTGGAGGCTGAAGTCAGCATCAATGAGGACGGCACACTGTTCGATGGGCGGCCAATTGAATCTCTGTCATTGATTGACGCGGTGATGCCCGATGTCGTACAAACCCGGCAGCAGGCGTACAGAGACAAACTGGCCCAGCAACAGGCCGCCGCAGCGCCCTCTGCAACCAGCGCCAACATGCAGGGTAACGCCAAAAATGGAGAGAACACCGCAAATGGAGAGGAGAACGGTGCACACGCCTTACCTAATAACCATGCAGACATGATGGAGGTGGACGTGGATGTGGAGATCCCTCAGAATAAAGCCATGGTCCTGAGAGGTCACGAGTCAGAGGTCTTCATCTGCGCCTGGAACCCCGTCAGTGACCTGCTCGCCTCCGGGTCTGGAGACTCAACAGCACGTATCTGGAATCTGAGCGAGAACAGCAGTAGTAGCTCTACACAGCTCGTCCTGAGGCACTGCATACGGGAAGGTGGCCAAGATGTGCCCAGCAACAAAGACGTCACGTCGTTAGACTGGAACAGTGAAGGTACACTATTAGCGACAGGCTCCTATGATGGCTTTGCAAGAATATGGACTAAAGATGGTAATCTGGCCAGTACCCTGGGGCAACATAAAGGTCCAATTTTCGCATTAAAATGGAACAAAAAAGGAAACTTTATCCTCAGCGCCGGTGTTGATAAGACAACAATCATTTGGGATGCTCACACAGGGGAAGCCAAACAGCAGTTCCCGTTTCATTCAGCACCCGCTTTGGACGTAGACTGGCAGAGTAACAACACGTTTGCCTCTTGTAGCACAGACATGTGCATCCATGTGTGCAAACTGGGTCAGGACCGACCCATTAAGACATTCCAAGGACACACAAATGAAGTTAATGCAATCAAATGGGATCCGACTGGCAACCTGCTGGCGTCGTGTTCTGATGATATGACTCTGAAGATCTGGAGTATGAAACAGGACACTTGTGTTCATGATTTGCAAGCGCATAGCAAAGAAATCTACACTATCAAATGGAGCCCCACAGGTCCAGGAACCAACAACCCCAATGCCAATCTAATGCTGGCCAGTGCTTCCTTTGACTCCACTGTTCGGCTTTGGGACGTAGATCGAGGCATCTGCATCCACACACTAACCAAACACCAGGAGCCCGTGTACAGCGTGGCCTTTAGCCCTGATGGACGCCATCTAGCCAGCGGCTCCTTCGACAAGTGTGTCCACATCTGGAACACACAGACTGGTGCTTTAGTCCATAGCTACAGAGGGACAGGGGGCATTTTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTAGGAGCAAGTGCGTCGGACGGCTCTTTTTTATGCTATGGTGTAATTGTTATTCCACCTTGTACCGTATCCCCCCACATGAGAGGTACATTAACCACAAAACAAAAAACAGGCACGCACACATCTACAGGAAATACATCCGTTCACCCATACTATATTCAGTTCCCCTTAAAATTAACAAAGAATTCTGTTCCTCAGGTCAAGATGTTTCAGCAGCCAAGGACCGTTTGACATGCATGTAGATTTAAAAACAAAAGACTTGCTTTAGGTTTGCAGTATTTTGAATTAAACATCTTATTTCATACATCATTTTA

Function

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K04508 TBL1; transducin (beta)-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274896 lncRNA upstream 84923 514867 ~ 515430 (+) True G242158
TU274842 lncRNA upstream 164908 435089 ~ 435445 (+) True G242105
TU274835 lncRNA upstream 176669 423458 ~ 423684 (+) True G242098
TU274834 lncRNA upstream 179617 420480 ~ 420736 (+) True G242097
TU274832 lncRNA upstream 180319 419364 ~ 420034 (+) True G242095
TU274932 lncRNA downstream 6378 616783 ~ 617152 (+) True G242192
TU275380 lncRNA downstream 256991 867396 ~ 874944 (+) True G242611
TU275422 lncRNA downstream 393364 1003769 ~ 1004087 (+) True G242653
TU275425 lncRNA downstream 395374 1005779 ~ 1006120 (+) True G242656
TU275426 lncRNA downstream 402732 1013137 ~ 1013471 (+) True G242657
CI01000056_00376962_00378136.mRNA mRNA upstream 221845 376962 ~ 378508 (+) True CI01000056_00376962_00378136
CI01000056_00349501_00362980.mRNA mRNA upstream 237373 349501 ~ 362980 (+) True CI01000056_00349501_00362980
CI01000056_00256621_00277009.mRNA mRNA upstream 321958 256447 ~ 278395 (+) True CI01000056_00256621_00277009
CI01000056_00233785_00245058.mRNA mRNA upstream 354935 233546 ~ 245418 (+) True CI01000056_00233785_00245058
CI01000056_00069260_00074705.mRNA mRNA upstream 525643 68778 ~ 74710 (+) True CI01000056_00069260_00074705
CI01000056_01059066_01060580.mRNA mRNA downstream 448661 1059066 ~ 1060614 (+) False CI01000056_01059066_01060580
CI01000056_01306290_01314471.mRNA mRNA downstream 695471 1305876 ~ 1314626 (+) True CI01000056_01306290_01314471
CI01000056_01714213_01714936.mRNA mRNA downstream 1103537 1713942 ~ 1714975 (+) True CI01000056_01714213_01714936
CI01000056_01720495_01737951.mRNA mRNA downstream 1110090 1720495 ~ 1738749 (+) True CI01000056_01720495_01737951
CI01000056_01749027_01767554.mRNA mRNA downstream 1138471 1748876 ~ 1767853 (+) True CI01000056_01749027_01767554
TU274694 other upstream 439403 155068 ~ 160950 (+) True G241982
TU275453 other downstream 448484 1058889 ~ 1062844 (+) True CI01000056_01059066_01060580

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006380 True 2433 mRNA 0.47 14 NC_007122.7 8660158 ~ 8682447 (+)
bowfin (Amia calva) AMCG00014212 True 1431 mRNA 0.55 13 CM030128.1 4588397 ~ 4605961 (-)