CI01000056_00601216_00610322 (TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L)


Basic Information

Item Value
gene id CI01000056_00601216_00610322
gene name TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 600353 ~ 610405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_00601216_00610322.mRNA
GTATAAATGAGGATGTGATCTGGAATGGTGGACACAGAGGTCGTGAGGAAATGGGTCACTTTTCAGAATTGGCCCACTTGTGGTAACGCAGATTTTTGAGGTGGAACTGAAAATGTTTGTGCTCGGTGATGCTCTTTTCTGGAGGAAGTCCAATGTTGAGTGAAATTGAAATTCAGGCTTAATATAGTGTATTATTTAAATAAACTACCCAAAATTGTTTAGCAGTGTCCTTGAGAATCATTTTTTTTTTGTTTTTTTTTTTGCTTTCAATCACAAAGTGAACAATTTAACTGTGCAAGTACCAAATTTTTATTGTCAAATCTAGGTCACTTTTAATTTCAAGCAGATGTTCCTGTGCTACAAAATTAAGTGCATCTGTAAGTGCAAACTGACATTTTGTCAGCTCTGTAATGCCAAAATCACAATGAATTCAAGTGTCAAACACAAGTAAACAAAGGTATTCTGTAGTAGCCCTCATGTAAACATTTTCAGTGGCAGATGCTTTTACTGCTCTGCAGGTTTGGTGCAGCAGCGCCACCAAAGTGTAATGGATACTTTAGGTACTACAACTTGTTATTCAGCCATGCAGGGCTGTGAAGCCCTTGGTAACCTCTGGCAGCATAGTACGCACTCAGGTTCCTGCTGACAAAGAGAGTTTTATCCCCTTATTGCACTGTAAAAGAGTTTTTTTTATACACACTCTGAGTCCCTTGAGTGGAAGGCAGAAAGCCTGGCAATATCCATACCTCTTCTGTTGTTGTTTTTAGTGTCATTCTGTGAGATGGCTTTCTGATTTGTTTGTGTTCTTTCTCTCTCAGGCTTGTGTCCTGTGTGCTGACCTCATGGTGTAAGCAGGTGTGAAGATGAGTATTAGCAGCGATGAGGTCAACTTCCTGGTGTATAGATACCTGCAGGAGTCAGTGAGGGCGTTGTTTAAGGGAGCACACATGATACCCTCCACTGGAGAGAAAGTTGATCCAGCAAGCGTCACACTGAAGTGTTTATCATTCCCTCTGGCAGGGTTTTCCCACTCGGCCTTCACATTCGGCATTGAGAGCCACATCAGTCAGTCTAACATCAACGGCGCCCTAGTGCCCCCTGCTGCCCTGATTTCCATCATCCAGAAGGGCCTGCAGTATGTGGAGGCTGAAGTCAGCATCAATGAGGACGGCACACTGTTCGATGGGCGGCCAATTGAATCTCTGTCATTGATTGACGCGGTGATGCCCGATGTCGTACAAACCCGGCAGCAGGCGTACAGAGACAAACTGGCCCAGCAACAGGCCGCCGCAGCGCCCTCTGCAACCAGCGCCAACATGCAGGGTAACGCCAAAAATGGAGAGAACACCGCAAATGGAGAGGAGAACGGTGCACACGCCTTACCTAATAACCATGCAGACATGATGGAGGTGGACGTGGATGTGGAGATCCCTCAGAATAAAGCCATGGTCCTGAGAGGTCACGAGTCAGAGGTCTTCATCTGCGCCTGGAACCCCGTCAGTGACCTGCTCGCCTCCGGGTCTGGAGACTCAACAGCACGTATCTGGAATCTGAGCGAGAACAGCAGTAGTAGCTCTACACAGCTCGTCCTGAGGCACTGCATACGGGAAGGTGGCCAAGATGTGCCCAGCAACAAAGACGTCACGTCGTTAGACTGGAACAGTGAAGGTACACTATTAGCGACAGGCTCCTATGATGGCTTTGCAAGAATATGGACTAAAGATGGTAATCTGGCCAGTACCCTGGGGCAACATAAAGGTCCAATTTTCGCATTAAAATGGAACAAAAAAGGAAACTTTATCCTCAGCGCCGGTGTTGATAAGACAACAATCATTTGGGATGCTCACACAGGGGAAGCCAAACAGCAGTTCCCGTTTCATTCAGCACCCGCTTTGGACGTAGACTGGCAGAGTAACAACACGTTTGCCTCTTGTAGCACAGACATGTGCATCCATGTGTGCAAACTGGGTCAGGACCGACCCATTAAGACATTCCAAGGACACACAAATGAAGTTAATGCAATCAAATGGGATCCGACTGGCAACCTGCTGGCGTCGTGTTCTGATGATATGACTCTGAAGATCTGGAGTATGAAACAGGACACTTGTGTTCATGATTTGCAAGCGCATAGCAAAGAAATCTACACTATCAAATGGAGCCCCACAGGTCCAGGAACCAACAACCCCAATGCCAATCTAATGCTGGCCAGTGCTTCCTTTGACTCCACTGTTCGGCTTTGGGACGTAGATCGAGGCATCTGCATCCACACACTAACCAAACACCAGGAGCCCGTGTACAGCGTGGCCTTTAGCCCTGATGGACGCCATCTAGCCAGCGGCTCCTTCGACAAGTGTGTCCACATCTGGAACACACAGACTGGTGCTTTAGTCCATAGCTACAGAGGGACAGGGGGCATTTTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTAGGAGCAAGTGCGTCGGACGGCTCTTTTTTATGCTATGGTGTAATTGTTATTCCACCTTGTACCGTATCCCCCCACATGAGAGGTACATTAACCACAAAACAAAAAACAGGCACGCACACATCTACAGGAAATACATCCGTTCACCCATACTATATTCAGTTCCCCTTAAAATTAACAAAGAATTCTGTTCCTCAGGTCAAGATGTTTCAGCAGCCAAGGACCGTTTGACATGCATGTAGATTTAAAAACAAAAGACTTGCTTTAGGTTTGCAGTATTTTGAATTAAACATCTTATTTCATACATCATTTTA

Function

symbol description
tbl1xr1a Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation and regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 41. Orthologous to human TBL1XR1 (TBL1X receptor 1).
tbl1xr1 Enables several functions, including beta-catenin binding activity; protein N-terminus binding activity; and transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of canonical Wnt signaling pathway; and positive regulation of transcription by RNA polymerase II. Located in mitotic spindle and nucleus. Part of histone deacetylase complex and transcription repressor complex. Implicated in autosomal dominant non-syndromic intellectual disability 41.

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K04508 TBL1; transducin (beta)-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_00601216_00610322.mRNA True 2764 mRNA 0.46 14 600353 610405

Neighbor

gene id symbol gene type direction distance location
CI01000056_00376962_00378136 ARPC4 coding upstream 221845 376962 ~ 378508 (+)
CI01000056_00349501_00362980 RAB7A, RAB7 coding upstream 237373 349501 ~ 362980 (+)
CI01000056_00256621_00277009 LRIG1 coding upstream 321958 256447 ~ 278395 (+)
CI01000056_00233785_00245058 NA coding upstream 354935 233546 ~ 245418 (+)
CI01000056_00069260_00074705 NA coding upstream 525643 68778 ~ 74710 (+)
CI01000056_01059066_01060580 NA coding downstream 448661 1058889 ~ 1062844 (+)
CI01000056_01306290_01314471 NA coding downstream 695471 1305876 ~ 1314626 (+)
CI01000056_01714213_01714936 NA coding downstream 1103537 1713942 ~ 1714975 (+)
CI01000056_01720495_01737951 RBMS1A coding downstream 1110090 1720495 ~ 1738749 (+)
CI01000056_01749027_01767554 ITGB6 coding downstream 1138471 1748876 ~ 1767853 (+)
G242158 NA non-coding upstream 84923 514867 ~ 515430 (+)
G242105 NA non-coding upstream 164908 435089 ~ 435445 (+)
G242098 NA non-coding upstream 176669 423458 ~ 423684 (+)
G242097 NA non-coding upstream 179617 420480 ~ 420736 (+)
G242095 NA non-coding upstream 180319 419364 ~ 420034 (+)
G242192 NA non-coding downstream 6378 616783 ~ 617152 (+)
G242611 NA non-coding downstream 256991 867396 ~ 874944 (+)
G242653 NA non-coding downstream 393364 1003769 ~ 1004087 (+)
G242656 NA non-coding downstream 395374 1005779 ~ 1006120 (+)
G242657 NA non-coding downstream 402732 1013137 ~ 1013471 (+)
G241982 NA other upstream 439403 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003233 tbl1xr1a coding NC_007122.7 CM002895.2 8565323 ~ 8682447 (+)
bowfin (Amia calva) AMCG00014212 tbl1x,LOC106582098,LOC102307724,LOC101465000,LOC102798223 coding CM030128.1 CM030128.1 4588397 ~ 4605961 (-)