CI01000056_00256621_00277009 (LRIG1)


Basic Information

Item Value
gene id CI01000056_00256621_00277009
gene name LRIG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 256447 ~ 278395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_00256621_00277009.mRNA
GTATTAATATCCCACGGTATTTGCCCAATAGCTTGTACCCCAAGCTTTCATCTTATGCAACGTCATTTCCTTAAGCCCACTCTCTTTCTTTTTGTTATCTAGTAGCAAATTTAATAGAGGGAGATTTTTTTCTTTTTTTTTTCTTTAGTACTGTCCCATCCTCCAGTGCCGGGGATGGCTTACTCTGAAACTACCCCAAAACAAATTCCAGATGTGGAGAGCTTGACCTCGCCATTCCTTCCGTGGCCGGCAAAAACAAGCCTGTATGTGTTTGTGCGTTTGCATGTGTGTGTTGACAAATCAAGTTACCGTATCAAGCCACAGTCACTTGGCACTTCTAAAGGCGTGTGTGGAAACAAGCCTCCATTGGGCTTCAAAGCCCTATTGACACATTCTCTCCGAAAGAGCCTCATGTGGTTAGAGCAGCCAGCCGCCTATCAGCGCAGATATGTGGGTCAACATATGGCTTCACATAGTTGCCTATGCACTAATAAACCGAAAAACACTGCGATAACGCACCATAATAAAATCCGCAGACTGGAGGGGAGCCTGCTGCAGAACTTCTCTGCTCTGGAGACGCTAGATCTGAGTAATAATGACATCACAGAGCTGAGAGAGAACTGCTTCCCTCCGGGGTTACAAATCAAGGACCTGCACCTGAGCAGTAATAAGATTGTTCATCTGGAGTTCGGGGCATTTAAGAACCTCGCCGGAAGTCTGCAGATCCTCAGATTGAGCCGGAACCGACTGACCCACCTTCCCGTTAAAGGCCTGGAGCTGCCCAAGCTCACACAACTGGAGCTAAGCAGGAACAGGTTGCGGTTGATCGAGGGACTAACCTTCCAAGGTTTGAGCAGTTTAGAAGTTCTCAAGCTTCAGAGAAACAACATCAGCAAGCTGACGGATGGGGCGTTCTGGGGTCTGGCCCGGATGAGGGTTCTGCACCTGGACTATAACAGTCTGCGGGAGGTGAACAGCGGCTCTCTGTATGGTCTGGAGTCGCTTCTGCAGCTCTACCTCTCCAACAACTCCATCTCTAACTTTAACCCTGAGGGCTGGGGCTTCTGTGAGAGACTGCGAGAACTGAACTTGTCTTATAATAACCTGACGAAGCTGTCTGAGGGTAGTTTTGCCAAGCTGGTGAATTTGATCTCGCTGCGTTTGGGACACAATTCCATCAGTCACATCACGGAGGGAGCATTCAGAGGCCTTAGTTCCCTACGTACACTTGCCTTGCTGGGTCTCCCGTTGAAAAGGAGCAGGGGAGGTTTTAATTGGTGCGCGCTTCTGGCCGGGCGAGAGAAGCCCTGGTCGGGTGTGAAAGACCAGAACCGGACCGTCTTTGAGCCGAGAAGGGAGTTGGATCACAATGACATCTCTGGCACTATAGAGGACACCAATGGGGCCTTCACTGGCCTCGAAAACCTCAACAAGCTCAAGGGCATAAACCGCGAGGCCGGCGGAGGAGGGGGTGTATTCACACACATCAAACGCCCGGCTCTGCGCCTTTTGTTACGGGAGCAGAGGTTCGCAAATCTTCGGAAGCCGCCTGTTGATGCACATCCCTGGCCAAATCCTGACAGCCACCCTGCCAGAAAGCCTATTCACCCATCCTGGGAATATGCGAAAACTTGGGGGAAAATGCCATCCGTTCCATCCAACCAGAGGCATTCACTGCACTGGTTTCCGGAGTGGCTGGTAACACGAGGGCTGCAGCCTGGCGTTCAGGCCACATGTGCCCACCCAGAAAGCTTAAAGGGCACTAGCATCTACCAGGCCCCACCACAGAGCTTTGTTTGTGATGATCTTCCCAAACCCCAGATCACAGTCCACCCTGTCACAACGGCAGCGGTATTGGGCAAAGATGTGCGTCTGACCTGCACGGCTGCCAGCAGCAGCAGCTCACCCATGACCTTCACCTGGCGCAAGGACCAGGAGACGCTACGCCAAGCTGAGGTGGAGAACTTCGCCCATGTGCGGGCCAGTGATGGAGGGGTGATGGAGTACACCACTATCCTCCACCTCCGACATGTCACCTTCAACCATGAGGGCCGCTACCAGTGCATCATCAGTAACCACTTTGGCTCTTCCTACTCTAACAAGGCCCGGGTCACTGTAAACGTGCTGCCTTCATTCGTCAAGACCCCACGCGACATCACAATCCGCACGGGCACGAAGGCACGGTTGGAGTGCGCGGCCGAAGGACATCCGACTCCCCAGGTGGCGTGGCAGAAAGATGGTGGTACAGATTTCCCTGCCGCCCGAGAGCGCCGCATGCGTGTGATGCCTGATGATGATGTCTTCTTCATCATGGATGTGAAGCCTGAGGATATGGGCGTGTACAGCTGCACGGCCAAAAACACGGCAGGCATGATCTCCGCCAATGTCACACTAACAGTGCTAGAGACCCCTCATCTGGCACAGGAAATGGAGGATCGAAATGTGGTGGTGGGCGAAACTGTTGCATTGCAGTGCAAGGCTTTAGGCAGCCCACCTCCTCGCATCACCTGGCTAAAGGGGGAGGAGCCTCTTCACCCCAGCGACCGTCACCACTTCACTCCAGGGAATCAGCTCTTGGTGATCGGCACCACCACTTTAGAGGACGCAGGACGCTACACGTGTGTCATGTCTAACACCCTCGGCACAGAGCGCGCTCACTGCCAGCTGAATGTTTACCAGCGCTTCGAGGACTGTGCTCCTTTTACAAGCCCCAGCACTGTTACTGTTGGAATCATTGTCATAGCTGTGGTGACCAGTATTGTGGTGACATCACTAGTTTGGGTGTGTATTATCTACCAGACAAGGAAGAAGAGCGAGGAGTGCAGTGTAAACACAGACGAGACAATTGTCCCTCCTGATGTCCCCAGTTACTTGTCCTCTCAGGGCACTTTATCAGAGAGACAGGATGTGTGTATACGAGTGGAGTCCAATGGCGGATCTCAACCCAACGGACGCATAGAAAACAATGGATATGATGGGCCGGTCGTGTGTACAGACTGCTTGGAAAATGGTACCAGCTACTCCAAACACTGCAACTACCTCCCTCATGGGATAGCACCCCCTTCAGGCCTGGAGTATCAGCAGACACACCAGACATCAACTTTCACCAGCCACAACACTGGTGAACCACACTGCAATGGCACACCTAATGGGGTCAGGAAAGACAGTCAAGCTCCCATCTTTCCCACCAACCATGACAGGGTGTCAATATCACCCTCATCGCACCAGTACAATGACCGAAAAGGATTGTTGGTGAATAGGTCAGACACATCTCCCTCACTTGAAGAGACCTACCATCGGCCAGTAAAGCTCCTGTCTGGGGACTGTGACATTGGGTCCGAGCTTACACAGACTCTATTACCCAACGGACACGCACATATGCCTGATGCCACCCTAAGCGAGAGTGAATCCTTCGGGCGGGCCAGTGACTAACACCGCCCCATCACTTTTTTTTATCCTTTTGCACTGAGAACTGCTACCTCACACTGAGGGGCACAGACAAAGCTGCCCCCATCTATCTGAATGCAGAATAGGGGCGTCCGGAGTTTGAAGGAGAAGCTTGAGTGGGATGTTGGCATCCCGTGCGAGCGTTAATGATGTATATAAATATAAATCCTCCTCAGGGAGGCTTCGTTCACACTTCAGAAATGTGACTTGCATTTGACGCATGCAAAATGTATGACAGAGTGCTATAACGTTGGGCTTTGAGCTGTACATAAGAGTTTTCATATATAAATATATGAATGTATGTATTCTAGAACTTTTATAAAAGAGTGTTCAACTCTATTCGGTGCATGGTGAGATCAGAGTGGTTATATTTTATTTTTATTTCTTGCCTTTTTTTTTTTTTTTTAAACAGATCTCTCCTGCTTTTCCCGGTTTTATAAGCAGTGCCTTATTGCAAGATCAAAGATTTCACATGTTTTTTTTTTGTTGGGAAGATGTACACTTTCCCTTTCACAAATGGGAATTTTGTCATGCACTTGAAGTTTAAACAGCCCAATAATCATAATAGGCAGTCTTAAAGGAATATTCTAGGTTAAATAAGATACAGGGTTCCCATTCTCAGGGAATACCTGGAAATATCAGGGACTTTTAAAAAGAAAAAAAAAAATTTTTTTTGATAATGTCCATGACTATTCTAGGCATCAACAAACTCTTTAAAATTCATAAAAACGTTACAGACTTTTTATACTGAACAAACACTACTGTTCAGAAGTTTTTGGGGTCAGTAATATTTTTGTTTTTTATATTTTTATTCAGCAAGGATGCTTTAAATTGATAAAGTGACAGTAAAGACATGCATAATGTTGGAAAATTTGTATTTCAAATAAATGCTGTTCTTAGGTTCTATTCATCAAAGGATCCTGAAAAAATGTATCACAGTTTCAAAATATATTCAAATGTATATTAAAAGAAAAAAGTTAAATTGTAATAATTTCACAATATTACTGTTTTTACTGTATTTATTTGCCTTGGTAAGCATTGAGATTTTAAAAATCTTACGAGCCCCAAACTTATGAACGGTAGTGTAAGGGTGCTTTTCCACTGCATGCTACAGCTCGGTATGGCTCGTTTTAAATAGCACCATCTCGGTGAGGTTCCAAGCGAGCCGTACTGATACTAAAACGTGACGTATATGTTGGCGCCGATAGCCTCGTGGGCAGTATGCCGAAATATAGCGTTGTTGCGCTTTGGGTGGCCCGAGTTCGAGTCCCGGCTCGTGGACCTTTACCGGTCACGCCACCTCACTTCCTGTCTACTCTATACTGTCCTGTCACAATAAAGGCAAAAATCGGCAAAAATTACATCTAAAAA

Function

symbol description
lrig1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; notochord; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human LRIG1 (leucine rich repeats and immunoglobulin like domains 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_00256621_00277009.mRNA True 4818 mRNA 0.48 18 256447 278395

Neighbor

gene id symbol gene type direction distance location
CI01000056_00233785_00245058 NA coding upstream 11029 233546 ~ 245418 (+)
CI01000056_00069260_00074705 NA coding upstream 181737 68778 ~ 74710 (+)
CI01000056_00016906_00036156 SUCLG2 coding upstream 219935 16906 ~ 36512 (+)
CI01000056_00349501_00362980 RAB7A, RAB7 coding downstream 71106 349501 ~ 362980 (+)
CI01000056_00376962_00378136 ARPC4 coding downstream 98567 376962 ~ 378508 (+)
CI01000056_00601216_00610322 TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L coding downstream 321958 600353 ~ 610405 (+)
CI01000056_01059066_01060580 NA coding downstream 780671 1058889 ~ 1062844 (+)
CI01000056_01306290_01314471 NA coding downstream 1027481 1305876 ~ 1314626 (+)
G241992 NA non-coding upstream 79824 175586 ~ 176623 (+)
G241962 NA non-coding upstream 141591 114585 ~ 114856 (+)
G241951 NA non-coding upstream 161310 94812 ~ 95137 (+)
G241949 NA non-coding upstream 179755 72004 ~ 76692 (+)
G242075 NA non-coding downstream 109352 387747 ~ 388159 (+)
G242090 NA non-coding downstream 135377 413772 ~ 414002 (+)
G242092 NA non-coding downstream 137082 415477 ~ 415676 (+)
G242095 NA non-coding downstream 140969 419364 ~ 420034 (+)
G242097 NA non-coding downstream 142085 420480 ~ 420736 (+)
G241982 NA other upstream 95497 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location