RNA id: CI01000056_00256621_00277009.mRNA


Basic Information

Item Value
RNA id CI01000056_00256621_00277009.mRNA
length 4818
RNA type mRNA
GC content 0.48
exon number 18
gene id CI01000056_00256621_00277009
representative True

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 256447 ~ 278395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTAATATCCCACGGTATTTGCCCAATAGCTTGTACCCCAAGCTTTCATCTTATGCAACGTCATTTCCTTAAGCCCACTCTCTTTCTTTTTGTTATCTAGTAGCAAATTTAATAGAGGGAGATTTTTTTCTTTTTTTTTTCTTTAGTACTGTCCCATCCTCCAGTGCCGGGGATGGCTTACTCTGAAACTACCCCAAAACAAATTCCAGATGTGGAGAGCTTGACCTCGCCATTCCTTCCGTGGCCGGCAAAAACAAGCCTGTATGTGTTTGTGCGTTTGCATGTGTGTGTTGACAAATCAAGTTACCGTATCAAGCCACAGTCACTTGGCACTTCTAAAGGCGTGTGTGGAAACAAGCCTCCATTGGGCTTCAAAGCCCTATTGACACATTCTCTCCGAAAGAGCCTCATGTGGTTAGAGCAGCCAGCCGCCTATCAGCGCAGATATGTGGGTCAACATATGGCTTCACATAGTTGCCTATGCACTAATAAACCGAAAAACACTGCGATAACGCACCATAATAAAATCCGCAGACTGGAGGGGAGCCTGCTGCAGAACTTCTCTGCTCTGGAGACGCTAGATCTGAGTAATAATGACATCACAGAGCTGAGAGAGAACTGCTTCCCTCCGGGGTTACAAATCAAGGACCTGCACCTGAGCAGTAATAAGATTGTTCATCTGGAGTTCGGGGCATTTAAGAACCTCGCCGGAAGTCTGCAGATCCTCAGATTGAGCCGGAACCGACTGACCCACCTTCCCGTTAAAGGCCTGGAGCTGCCCAAGCTCACACAACTGGAGCTAAGCAGGAACAGGTTGCGGTTGATCGAGGGACTAACCTTCCAAGGTTTGAGCAGTTTAGAAGTTCTCAAGCTTCAGAGAAACAACATCAGCAAGCTGACGGATGGGGCGTTCTGGGGTCTGGCCCGGATGAGGGTTCTGCACCTGGACTATAACAGTCTGCGGGAGGTGAACAGCGGCTCTCTGTATGGTCTGGAGTCGCTTCTGCAGCTCTACCTCTCCAACAACTCCATCTCTAACTTTAACCCTGAGGGCTGGGGCTTCTGTGAGAGACTGCGAGAACTGAACTTGTCTTATAATAACCTGACGAAGCTGTCTGAGGGTAGTTTTGCCAAGCTGGTGAATTTGATCTCGCTGCGTTTGGGACACAATTCCATCAGTCACATCACGGAGGGAGCATTCAGAGGCCTTAGTTCCCTACGTACACTTGCCTTGCTGGGTCTCCCGTTGAAAAGGAGCAGGGGAGGTTTTAATTGGTGCGCGCTTCTGGCCGGGCGAGAGAAGCCCTGGTCGGGTGTGAAAGACCAGAACCGGACCGTCTTTGAGCCGAGAAGGGAGTTGGATCACAATGACATCTCTGGCACTATAGAGGACACCAATGGGGCCTTCACTGGCCTCGAAAACCTCAACAAGCTCAAGGGCATAAACCGCGAGGCCGGCGGAGGAGGGGGTGTATTCACACACATCAAACGCCCGGCTCTGCGCCTTTTGTTACGGGAGCAGAGGTTCGCAAATCTTCGGAAGCCGCCTGTTGATGCACATCCCTGGCCAAATCCTGACAGCCACCCTGCCAGAAAGCCTATTCACCCATCCTGGGAATATGCGAAAACTTGGGGGAAAATGCCATCCGTTCCATCCAACCAGAGGCATTCACTGCACTGGTTTCCGGAGTGGCTGGTAACACGAGGGCTGCAGCCTGGCGTTCAGGCCACATGTGCCCACCCAGAAAGCTTAAAGGGCACTAGCATCTACCAGGCCCCACCACAGAGCTTTGTTTGTGATGATCTTCCCAAACCCCAGATCACAGTCCACCCTGTCACAACGGCAGCGGTATTGGGCAAAGATGTGCGTCTGACCTGCACGGCTGCCAGCAGCAGCAGCTCACCCATGACCTTCACCTGGCGCAAGGACCAGGAGACGCTACGCCAAGCTGAGGTGGAGAACTTCGCCCATGTGCGGGCCAGTGATGGAGGGGTGATGGAGTACACCACTATCCTCCACCTCCGACATGTCACCTTCAACCATGAGGGCCGCTACCAGTGCATCATCAGTAACCACTTTGGCTCTTCCTACTCTAACAAGGCCCGGGTCACTGTAAACGTGCTGCCTTCATTCGTCAAGACCCCACGCGACATCACAATCCGCACGGGCACGAAGGCACGGTTGGAGTGCGCGGCCGAAGGACATCCGACTCCCCAGGTGGCGTGGCAGAAAGATGGTGGTACAGATTTCCCTGCCGCCCGAGAGCGCCGCATGCGTGTGATGCCTGATGATGATGTCTTCTTCATCATGGATGTGAAGCCTGAGGATATGGGCGTGTACAGCTGCACGGCCAAAAACACGGCAGGCATGATCTCCGCCAATGTCACACTAACAGTGCTAGAGACCCCTCATCTGGCACAGGAAATGGAGGATCGAAATGTGGTGGTGGGCGAAACTGTTGCATTGCAGTGCAAGGCTTTAGGCAGCCCACCTCCTCGCATCACCTGGCTAAAGGGGGAGGAGCCTCTTCACCCCAGCGACCGTCACCACTTCACTCCAGGGAATCAGCTCTTGGTGATCGGCACCACCACTTTAGAGGACGCAGGACGCTACACGTGTGTCATGTCTAACACCCTCGGCACAGAGCGCGCTCACTGCCAGCTGAATGTTTACCAGCGCTTCGAGGACTGTGCTCCTTTTACAAGCCCCAGCACTGTTACTGTTGGAATCATTGTCATAGCTGTGGTGACCAGTATTGTGGTGACATCACTAGTTTGGGTGTGTATTATCTACCAGACAAGGAAGAAGAGCGAGGAGTGCAGTGTAAACACAGACGAGACAATTGTCCCTCCTGATGTCCCCAGTTACTTGTCCTCTCAGGGCACTTTATCAGAGAGACAGGATGTGTGTATACGAGTGGAGTCCAATGGCGGATCTCAACCCAACGGACGCATAGAAAACAATGGATATGATGGGCCGGTCGTGTGTACAGACTGCTTGGAAAATGGTACCAGCTACTCCAAACACTGCAACTACCTCCCTCATGGGATAGCACCCCCTTCAGGCCTGGAGTATCAGCAGACACACCAGACATCAACTTTCACCAGCCACAACACTGGTGAACCACACTGCAATGGCACACCTAATGGGGTCAGGAAAGACAGTCAAGCTCCCATCTTTCCCACCAACCATGACAGGGTGTCAATATCACCCTCATCGCACCAGTACAATGACCGAAAAGGATTGTTGGTGAATAGGTCAGACACATCTCCCTCACTTGAAGAGACCTACCATCGGCCAGTAAAGCTCCTGTCTGGGGACTGTGACATTGGGTCCGAGCTTACACAGACTCTATTACCCAACGGACACGCACATATGCCTGATGCCACCCTAAGCGAGAGTGAATCCTTCGGGCGGGCCAGTGACTAACACCGCCCCATCACTTTTTTTTATCCTTTTGCACTGAGAACTGCTACCTCACACTGAGGGGCACAGACAAAGCTGCCCCCATCTATCTGAATGCAGAATAGGGGCGTCCGGAGTTTGAAGGAGAAGCTTGAGTGGGATGTTGGCATCCCGTGCGAGCGTTAATGATGTATATAAATATAAATCCTCCTCAGGGAGGCTTCGTTCACACTTCAGAAATGTGACTTGCATTTGACGCATGCAAAATGTATGACAGAGTGCTATAACGTTGGGCTTTGAGCTGTACATAAGAGTTTTCATATATAAATATATGAATGTATGTATTCTAGAACTTTTATAAAAGAGTGTTCAACTCTATTCGGTGCATGGTGAGATCAGAGTGGTTATATTTTATTTTTATTTCTTGCCTTTTTTTTTTTTTTTTAAACAGATCTCTCCTGCTTTTCCCGGTTTTATAAGCAGTGCCTTATTGCAAGATCAAAGATTTCACATGTTTTTTTTTTGTTGGGAAGATGTACACTTTCCCTTTCACAAATGGGAATTTTGTCATGCACTTGAAGTTTAAACAGCCCAATAATCATAATAGGCAGTCTTAAAGGAATATTCTAGGTTAAATAAGATACAGGGTTCCCATTCTCAGGGAATACCTGGAAATATCAGGGACTTTTAAAAAGAAAAAAAAAAATTTTTTTTGATAATGTCCATGACTATTCTAGGCATCAACAAACTCTTTAAAATTCATAAAAACGTTACAGACTTTTTATACTGAACAAACACTACTGTTCAGAAGTTTTTGGGGTCAGTAATATTTTTGTTTTTTATATTTTTATTCAGCAAGGATGCTTTAAATTGATAAAGTGACAGTAAAGACATGCATAATGTTGGAAAATTTGTATTTCAAATAAATGCTGTTCTTAGGTTCTATTCATCAAAGGATCCTGAAAAAATGTATCACAGTTTCAAAATATATTCAAATGTATATTAAAAGAAAAAAGTTAAATTGTAATAATTTCACAATATTACTGTTTTTACTGTATTTATTTGCCTTGGTAAGCATTGAGATTTTAAAAATCTTACGAGCCCCAAACTTATGAACGGTAGTGTAAGGGTGCTTTTCCACTGCATGCTACAGCTCGGTATGGCTCGTTTTAAATAGCACCATCTCGGTGAGGTTCCAAGCGAGCCGTACTGATACTAAAACGTGACGTATATGTTGGCGCCGATAGCCTCGTGGGCAGTATGCCGAAATATAGCGTTGTTGCGCTTTGGGTGGCCCGAGTTCGAGTCCCGGCTCGTGGACCTTTACCGGTCACGCCACCTCACTTCCTGTCTACTCTATACTGTCCTGTCACAATAAAGGCAAAAATCGGCAAAAATTACATCTAAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274711 lncRNA upstream 79824 175586 ~ 176623 (+) True G241992
TU274654 lncRNA upstream 141591 114585 ~ 114856 (+) True G241962
TU274643 lncRNA upstream 161310 94812 ~ 95137 (+) True G241951
TU274637 lncRNA upstream 179755 72004 ~ 76692 (+) True G241949
TU274809 lncRNA downstream 109352 387747 ~ 388159 (+) True G242075
TU274826 lncRNA downstream 135377 413772 ~ 414002 (+) True G242090
TU274828 lncRNA downstream 137082 415477 ~ 415676 (+) True G242092
TU274832 lncRNA downstream 140969 419364 ~ 420034 (+) True G242095
TU274834 lncRNA downstream 142085 420480 ~ 420736 (+) True G242097
CI01000056_00233785_00245058.mRNA mRNA upstream 11029 233546 ~ 245418 (+) True CI01000056_00233785_00245058
CI01000056_00069260_00074705.mRNA mRNA upstream 181737 68778 ~ 74710 (+) True CI01000056_00069260_00074705
CI01000056_00016906_00036156.mRNA mRNA upstream 219935 16906 ~ 36512 (+) True CI01000056_00016906_00036156
CI01000056_00349501_00362980.mRNA mRNA downstream 71106 349501 ~ 362980 (+) True CI01000056_00349501_00362980
CI01000056_00376962_00378136.mRNA mRNA downstream 98567 376962 ~ 378508 (+) True CI01000056_00376962_00378136
CI01000056_00601216_00610322.mRNA mRNA downstream 321958 600353 ~ 610405 (+) True CI01000056_00601216_00610322
CI01000056_01059066_01060580.mRNA mRNA downstream 780671 1059066 ~ 1060614 (+) False CI01000056_01059066_01060580
CI01000056_01306290_01314471.mRNA mRNA downstream 1027481 1305876 ~ 1314626 (+) True CI01000056_01306290_01314471
TU274694 other upstream 95497 155068 ~ 160950 (+) True G241982
TU275453 other downstream 780494 1058889 ~ 1062844 (+) True CI01000056_01059066_01060580

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007757 False 7283 mRNA 0.43 18 NC_007122.7 16329776 ~ 16395956 (-)