G241962


Basic Information

Item Value
gene id G241962
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 114585 ~ 114856 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU274654
AAGTTAATGAGATAATATACTTTTTGTGGAGTTGTTTATTCAGATCTTGAGAGATTTAATGTCTTTTATCTTCAGTTGATTTCATCTAAGGCTGTGGCTGGAAGTCATTTGTAGTTATTGTGTTTCTCTTCAGTGATTCTGCTTGTTAACAGCAGGTGTTCATCACTAATGCTCAATCATAACTTAATTAATCACTTAATTATCTCATTAACTTTAACTCTGCTTCAGTGTTACTTTTACACTATATAGAGAGGGACCATATGTAATCTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU274654 True 272 lncRNA 0.32 1 114585 114856

Neighbor

gene id symbol gene type direction distance location
CI01000056_00069260_00074705 NA coding upstream 39875 68778 ~ 74710 (+)
CI01000056_00016906_00036156 SUCLG2 coding upstream 78073 16906 ~ 36512 (+)
CI01000056_00233785_00245058 NA coding downstream 118690 233546 ~ 245418 (+)
CI01000056_00256621_00277009 LRIG1 coding downstream 141591 256447 ~ 278395 (+)
CI01000056_00349501_00362980 RAB7A, RAB7 coding downstream 234645 349501 ~ 362980 (+)
CI01000056_00376962_00378136 ARPC4 coding downstream 262106 376962 ~ 378508 (+)
CI01000056_00601216_00610322 TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L coding downstream 485497 600353 ~ 610405 (+)
G241951 NA non-coding upstream 19448 94812 ~ 95137 (+)
G241949 NA non-coding upstream 37893 72004 ~ 76692 (+)
G241992 NA non-coding downstream 60730 175586 ~ 176623 (+)
G242075 NA non-coding downstream 272891 387747 ~ 388159 (+)
G242090 NA non-coding downstream 298916 413772 ~ 414002 (+)
G242092 NA non-coding downstream 300621 415477 ~ 415676 (+)
G242095 NA non-coding downstream 304508 419364 ~ 420034 (+)
G241982 NA other downstream 40212 155068 ~ 160950 (+)
CI01000056_01059066_01060580 NA other downstream 944033 1058889 ~ 1062844 (+)

Expression


Co-expression Network