CI01000056_01749027_01767554 (ITGB6)


Basic Information

Item Value
gene id CI01000056_01749027_01767554
gene name ITGB6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1748876 ~ 1767853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_01749027_01767554.mRNA
GCATATAAAGGTTGGGCAGGTAAGCGCACGCGCTGAGTCTGTCTGTCCAGGTGAGCTCAGACCTGCTCGCGCTACATGATCGCATCCCGCGTTTGTTTGTGTGAGAATATGAACTGTATTTTTTCTCTGTGATCAGAAACCGTGAGGACTAATGGGGATTGTTTCACTCTACCTTGTCCTTCACTTCTGGCTCGGCACTGTCGGAGGGACGTGTTCTCAGTTCAGTGCTCTCTCCTGTGACATGTGTCTACAGCTGGGGCCGCAGTGCGCCTGGTGCACACTACAGAATTTCACCGACTTTTTCTCAATCGAGGAGAGATGCGACACACCAGAGGCTCTTCTTCAGAAGGGATGCTCTGGCGAATTCGTGGAGTTCCCCGTCACGAATGTCAAAGTGCTGAAGGATCAAGGGTTAGGAAAGCGCGCCAGCCTAACCAATGTTTCATACATCGCTCCTCAGAAGATGCACCTCCAGCTTAGACCAGGAAGTCAGCTGACCTTTCAGATTCAAGTGCAGCAACCGGAGGACCATCCGGTGGACATCTATTACCTGATGGACCTGTCAGCATCTATGGTTGATGATCTGAAAATGATCAAAGACTTGGGTTCGACTCTCTCAAAAAAGATGGCTAGTCTTACCAGCAAATTCAGACTAGGATTCGGCTCCTTTGTGGAGAAACCAGTTCTGCCTTTCATCAAGATAACACACGAGGAGCTGGCCAATCCCTGCAGGAGTGTTGATCATGAATGTCCCCCCACATTTGGATACAGACACCTCCTGTCATTAACAAGCAGTACTGACAAGTTTAATGAGATCGTCTCAAAGCAACAGGTATCTGCGAACATTGACGTGCCAGAGGGCGGTTTCGACGCCATCATGCAGGCAGCGGTGTGTGGGGACAGGATTGGCTGGCGGAACGATTCCATGAAGCTGTTGGTGTTCGTGAGCGATGCTGATTCTCATTTTGGGATGGATAGCAAAATGTCCGGCATCGTTGTTCCCAATGATGGAGAGTGTCACATGGATGACAATAATGAGTATTCCATGACTGCTCACCTGGAGTATCCATCATTAGGGCAGCTTGTCGACAAACTGGTTGAAAACAATATCCTCCTTATATTTGCTGTGACTGAAAATCAGAGACAGAACTATGAGAATTATGCAAGTCTGATTCCTGGTGCTACTGTGGGGGTGTTGGCATCCGATTCAAGGAACATTTTGGAACTAATCATGACCTCATATAAGGAACTGAGGTCGGAGATTGATCTAGAGGTTCTGGGCAACACTGAGGATCTGCAGATTTCCTTCACGGCACACTGTCAGGACGGAACCATCATCCCCGGACATAAAAACTGCTCCAATGTCAAAGCTGGTGATGTGGTATCTTTTAACGTTACGGTTGAGTTAAAAGGCTGTCTTGCTGGCCCACGGCAGTTTTCCTTGCGGCCGGCAGGTTTCCAAGATACCCTGGAGATCGAACTGGAGTCCCTGTGTGTGTGTGACTGCCATCAAACTCCCGAGGCGAACAGCACCTACTGCAGCCGAGGGCGAGGGGCGCTGGAGTGCGGAGCCTGTGTGTGTGACCCAGGCTTTGTGGGGCCGAAGTGTGAGTGCACAGAGGGCCAAGACCAAGTCAGTGACTGCAGGGAACATGAAGGTGCGGAGATGTGCAACGGCCAGGGCGAGTGTTTCTGCGGACAGTGTGTGTGCCACCCGTCCAATTTTGGTCGCGTATATGGGGCATACTGCGAGTGTGACAACTTCTCCTGCCTCAGGTTCAGAGGAGAGATTTGCGGAGGTCATGGGGAATGTGACTGTGGCGAGTGTGTGTGTCACAGAGGCTGGATGGGGGAGTTCTGTAACTGCAGCACCAGCACCAACTTGTGCACGTCTGCGGATGGGTCCGTCTGCAGCGGACGGGGAAAGTGTGTGTGTGGGAAGTGCGAGTGCACCGTTCCCGGAGCCTCAGGAGAGCGGTGCGAAAGGTGCCCAACCTGTGAAGATATCTGTAACTTACCCAGGTCTTGTGTGGAGTGTTACCTCAAAGCTAAAGACCCATCGGACGAGTGTGCTGTGAAGTGCAATTCCCTACATGCCACTGTCAGCAATTCCACAGATTTTGAGGAAAGTCGAGCAGCATTGTGCACCTTACAGAACGAGGACAGCTGCCTACTGTCTTTCAGCTTGGTGGACAGCGATCACGGCAGCATCATTTACAACCCCAGGATTTACGCCTGCCCTGACCCACCAAACGCACCATTGATTGCTCTGGGCGTGTGCATGTCTGTCCTCATCATTGGCCTTACACTCCTTGTGATCTGGAAGTTATTTGTTTCTGTCCATGACCGGAAAGAGGTTGCCAAGTTTGAGGCAGAGAAGGCGAAAGCAAGATGGCAGTCGCGTTCAAATCTGGTCGCGTCGCGTTTAGAGCAGACGGGCTGTAAGAAGAGAGGAATATTTTGCCTTTTTCTGCCCTATGGAGAGACCAGTGACGTAGAGAATCTAAAAAATTGCGGAAAGTGTGGAGAAAAACAGGCTGCAGTGTATGCGGCGCGCTCAACTCCGGTGGAAATGCAAGGATACACTCAAACTCCTCGTATTCGCTTCCATGAAGCGCTTTATGTCCTTTATATGCTGCTTTATGTCAATATTTTCGCTTGTGCTGCTGCGGAAGCCTCGGACAAATCTGAAGTTTGGAACAAAACTCAACTTCTCGAGCTGTACAGTAAGTGCAATCGGCCTGCGCGACATATCTGTGAAATATCTTACTGAAACGATTCTTTGCGCGATGGCATGAGCGCGTGGGTTTGGTCTTGATCAGAGTTTATCGTGTAACGTTAGATGAAGTCTGCTGTGCTCTGCAGATTACATTAGTATGTAGAGCGCATCGTCCAGCTCTTCTCTATGAAAGACTGACCGTAGTGTGTCATTCCTTGTCTGAGATAAACCTGCACAGACTATTATTTAAGTCTCAAGCGGGAGAGTAAACAAAATATGTTTAGTAGGCTAATGTGTTTTAAGAGTTATACAACTGCTGCCAATTAAACTTGGTGAAAGTTTGCTGTACACAA

Function

symbol description
itgb6 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin alphav-beta6 complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including adaxial cell; liver; musculature system; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1H. Orthologous to human ITGB6 (integrin subunit beta 6).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process

KEGG:

id description
K06589 ITGB6; integrin beta 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_01749027_01767554.mRNA True 3072 mRNA 0.50 16 1748876 1767853

Neighbor

gene id symbol gene type direction distance location
CI01000056_01720495_01737951 RBMS1A coding upstream 10127 1720495 ~ 1738749 (+)
CI01000056_01714213_01714936 NA coding upstream 33901 1713942 ~ 1714975 (+)
CI01000056_01306290_01314471 NA coding upstream 434250 1305876 ~ 1314626 (+)
CI01000056_01059066_01060580 NA coding upstream 688262 1058889 ~ 1062844 (+)
CI01000056_00601216_00610322 TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L coding upstream 1138471 600353 ~ 610405 (+)
CI01000056_01780748_01797031 NA coding downstream 12895 1780748 ~ 1797042 (+)
CI01000056_01804273_01835065 LY75 coding downstream 36351 1804204 ~ 1835717 (+)
CI01000056_01841169_01863442 MYOM2 coding downstream 73316 1841169 ~ 1863821 (+)
CI01000056_01873010_01874397 PTP4A1.L, TP4A1, PTP4A1.S, PTP4A1, PTP4A2 coding downstream 105157 1873010 ~ 1874752 (+)
CI01000056_01900971_01901584 HYLS1 coding downstream 133118 1900971 ~ 1901707 (+)
G242946 NA non-coding upstream 62975 1679862 ~ 1685901 (+)
G242970 NA non-coding upstream 75153 1673492 ~ 1673723 (+)
G242969 NA non-coding upstream 75388 1673273 ~ 1673488 (+)
G242967 NA non-coding upstream 77172 1671339 ~ 1671704 (+)
G242965 NA non-coding upstream 79075 1669598 ~ 1669801 (+)
CI01000056_01926091_01928840 NA non-coding downstream 157662 1925515 ~ 1928956 (+)
G242894 NA non-coding downstream 172603 1940456 ~ 1941386 (+)
G243010 NA non-coding downstream 187131 1954984 ~ 1955251 (+)
G242901 NA non-coding downstream 206934 1974787 ~ 1976411 (+)
G243017 NA non-coding downstream 224152 1992005 ~ 1992220 (+)
G241982 NA other upstream 1587926 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003243 itgb6 coding NC_007122.7 CM002895.2 10975012 ~ 11020857 (+)