G242894


Basic Information

Item Value
gene id G242894
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1940456 ~ 1941386 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU275684
AATTAGATCTAAACCTTTATTTTTAAATGTACTTTTACGTATTGTAGGTTACTTCTGTGATTGCAACAGTTCATTTCAAGGTACAAAGTGATGCACAAAGTTTGCAACTCCGTTAACAAAAGTCAATTACAAACATAAAGACATTACTATACTTACACACAGATGCATCATTAAAACACTTTCCTGTTTTAATCTATCGTCATCTGTATATTTACACTAGTTCTGTCTCAGCAGAATATTAGCATACTGTCTTTGATTAGACAATACAAGGTTACTGAGTTTTTAATTATAAACAAAAATGTACAAGTCAACAAAACACTGAATTGAAAAAGATTCACTTATACAAATAACAACAATTCTATCGTGTTCTCAGTCAGTTCTTTCAGTCCAAATGTGCCTAAATAATAAGCATATAAAATCTCCAAATGATTTTCCTCCGATCTGAACTCCAGATGCAGGCTCAGCTGTTGCTACGAGAGCCCATATAATCTTGTGCTGAAGGTCTTCTGTTTATGACTCTACACTGAGATAAAGATAGGGAAGAACATCTCCCGTCGTGTCGCGTCGGCCGCAGACTGAATCGTGTTTGACCGGTGAGTTCAGTATTACGGCTGGTTCATCTTGGCAGCTTCAGCTTTAATGAGAGAGATCAACTCCTGATTGATCAGGAACACAAAGCGAAGACCTGCAATCTGGACAAAACAAACAAAGATGTGCTTTATTGACCTGCTTTCTTTTAAAATTCCTTCCAGAGAGTCACTATGTAGACGACTGCAGAACATGTTTATTATGCAATAACAGTATTAGGCTATAGATAACAAGACATTTTTTAAATGGCAACATCTTTAGAGTCAATCACATTATTCATCCATAATTGGCATTTCAACACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU275684 True 890 lncRNA 0.36 2 1940456 1941386

Neighbor

gene id symbol gene type direction distance location
CI01000056_01926091_01928840 NA coding upstream 11500 1925515 ~ 1928956 (+)
CI01000056_01900971_01901584 HYLS1 coding upstream 38749 1900971 ~ 1901707 (+)
CI01000056_01873010_01874397 PTP4A1.L, TP4A1, PTP4A1.S, PTP4A1, PTP4A2 coding upstream 65704 1873010 ~ 1874752 (+)
CI01000056_01841169_01863442 MYOM2 coding upstream 76635 1841169 ~ 1863821 (+)
CI01000056_01804273_01835065 LY75 coding upstream 104739 1804204 ~ 1835717 (+)
CI01000056_01963536_01972044 INPP1 coding downstream 22150 1963536 ~ 1972600 (+)
CI01000056_02009618_02014292 NABP2 coding downstream 68232 2009618 ~ 2014605 (+)
G242946 NA non-coding upstream 254555 1679862 ~ 1685901 (+)
G242970 NA non-coding upstream 266733 1673492 ~ 1673723 (+)
G242969 NA non-coding upstream 266968 1673273 ~ 1673488 (+)
G242967 NA non-coding upstream 268752 1671339 ~ 1671704 (+)
G243010 NA non-coding downstream 13598 1954984 ~ 1955251 (+)
G242901 NA non-coding downstream 33401 1974787 ~ 1976411 (+)
G243017 NA non-coding downstream 50619 1992005 ~ 1992220 (+)
G243022 NA non-coding downstream 53764 1995150 ~ 1999442 (+)
G243043 NA non-coding downstream 120451 2061837 ~ 2065826 (+)
CI01000056_01059066_01060580 NA other upstream 877612 1058889 ~ 1062844 (+)
G241982 NA other upstream 1779506 155068 ~ 160950 (+)

Expression


Co-expression Network