G242967


Basic Information

Item Value
gene id G242967
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1671339 ~ 1671704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU275760
CGTTTGAGTGTTAAAATGAAAAAAGTCAGATTCTTTGATCACATTTCTTTCCCTGTTCTGTGAGACCTGAATGTCTTTTGCTGTCTGAACATCTGAATCAGGAGTGACAGAGGAATTTCTCTGTTGTGCTTCTTCCAAAATCCTTAAATCACTGGATTTAATGGAAGATTGAGTCTCAGTCCATGTCGAATCCGCGGCATCTTTTCCTTCAAGCTCCTCAGAAACCTCCAGCGAAGATCTGTCTATTTCCAACATATCTCCATCCTCGGGCATGTAATTCGGTTGTGTGGATCTTTCATGTGTCACATCCATAACCCAGTCAGGCAGATTTGAGATGGTTTTACTGCTGTTATCTAGCAAACCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU275760 True 366 lncRNA 0.41 1 1671339 1671704

Neighbor

gene id symbol gene type direction distance location
CI01000056_01306290_01314471 NA coding upstream 356713 1305876 ~ 1314626 (+)
CI01000056_01059066_01060580 NA coding upstream 610725 1058889 ~ 1062844 (+)
CI01000056_00601216_00610322 TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L coding upstream 1060934 600353 ~ 610405 (+)
CI01000056_00376962_00378136 ARPC4 coding upstream 1292831 376962 ~ 378508 (+)
CI01000056_00349501_00362980 RAB7A, RAB7 coding upstream 1308359 349501 ~ 362980 (+)
CI01000056_01714213_01714936 NA coding downstream 42238 1713942 ~ 1714975 (+)
CI01000056_01720495_01737951 RBMS1A coding downstream 48791 1720495 ~ 1738749 (+)
CI01000056_01749027_01767554 ITGB6 coding downstream 77172 1748876 ~ 1767853 (+)
CI01000056_01780748_01797031 NA coding downstream 109044 1780748 ~ 1797042 (+)
CI01000056_01804273_01835065 LY75 coding downstream 132500 1804204 ~ 1835717 (+)
G242965 NA non-coding upstream 1538 1669598 ~ 1669801 (+)
G242892 NA non-coding upstream 2361 1620666 ~ 1668978 (+)
G242963 NA non-coding upstream 12593 1658266 ~ 1658746 (+)
G242953 NA non-coding upstream 53560 1617548 ~ 1617779 (+)
G242952 NA non-coding upstream 54117 1616957 ~ 1617222 (+)
G242969 NA non-coding downstream 1569 1673273 ~ 1673488 (+)
G242970 NA non-coding downstream 1788 1673492 ~ 1673723 (+)
G242946 NA non-coding downstream 8158 1679862 ~ 1685901 (+)
CI01000056_01926091_01928840 NA non-coding downstream 253811 1925515 ~ 1928956 (+)
G242894 NA non-coding downstream 268752 1940456 ~ 1941386 (+)
G241982 NA other upstream 1510389 155068 ~ 160950 (+)

Expression


Co-expression Network