CI01000056_01804273_01835065 (LY75)


Basic Information

Item Value
gene id CI01000056_01804273_01835065
gene name LY75
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1804204 ~ 1835717 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_01804273_01835065.mRNA
CTATAAAAGCATATGTAGTCTGGAGAGACGTGAGACTGCAGTCAGGAGGGGTTGTTTACATTTCTAATCATGGATTGGAGAACACAGCAGTTGTTTTATACTATAATATTCCTACTTTCGCGAGAAAGCGCGGCTCTAAGTTACGCATCAGCTGTAAACAGCGGAGATGACACGTTTACTATCCAGCACAATGGCAATGGGAAATGCCTCCTTGTTGAAAATGAAGCTTTGAAGTTGGGAGATTGTTCGTTAGTCCCGGCTGTGTCGTGGAAGTGGGGTTCGGCCCACAGGCTGTTCCACGTGGAATCGTCTAAGTGTTTGGGTCTTGAGGTGCGCTCCAAAACCGTGACCCTGTTCAGCTGCGACTCCACAGAGATTCTGCGGTGGAAGTGCTATGAGGACGTCATCTACACAGAATACCAAATGAAACTCAGCGCCGGGCCTAACGACTCTGTAACCGCCAAGAGGGACGGACAGGACACTTGGAAAAGTGGAGGGAGCTCGGATAACATCTGTCAGCGGCCGTATCAAAGAATGCACACAAGCGGGGGGAATTCTAACGGGGCACCCTGTGAGTTTCCCTTTCTCTACAATGGGACCTGGCACCACAACTGCCTGCCTGGCACCGACGACAGAACGCTGGATTGGTGCTCTACTACGGCAAACTATGATCTAGAGAAGAAGTGGGGAACTTGTCTGAAATACGTGGAAGGATGTTCTACTTTATGGGAGGAAGGCCCAGTGAAAGGACGCTGCTATCAGGTCGTATCCACAGCGGTGGTGACTTGGCATGAGGCGCGGGATGCCTGTCGTAGTCAAGATGGAGATCTGCTCAGCGTGTCTAGCCCTCAAGAGCTTGAGTTCTTTAAAAATCAGAAAGACTTGCCAAGCAAGCTGTGGATCGGCTTGAACCATCTGGACTGGATGCAGGGTTGGCAGTGGTCAGATGGATCAGCTTTATCTTTTGCCCCTTGGGAAACAGAGATCCCAATAAGATCCCTTATGTCGGACGAGGACTGTGGGGTTCTGAAGGAGCCGCTGCATTTTGGCGCAGAGACGTGTGAAAATCGGCTTCCATTCATCTGCATGAAGAATAACAAAGACAATGAGAGTACAGCAGTCAGGGAGGTGTATAAGCCCACATTGTGTAGAAATGGAGATTGGATTGGGTGGAAAGGATTCTGTTATAAACTCCACAGTACAACAGAGTCGAAATTGTCCCATCATGAAGCTCGGAATACGTGTGAGATGGATAAATCTCATCTTGCCAGCCTGCACAGTATAGAAGATATAGAAATGCTACACACAAACTTTCACGCAGATCTGAAGACAGAGGTATGGATTGGTCTTTGGGGTAATGGAACCACCTCTGTCTTTGAATGGATCGATGAAGTACCAGTGTCTTTCACATACTGGGCCAGAGCTCAACCTCCACCACTTCTACCAAATACCATCAACTGCGTGTATTATTCAGGAGAGCATCATACATGGTCTGTGTCTGACTGTGAAAAGCCGAGGGCTTACATGTGTAAGGAAAAAGGGAGTGTGAATGAGAGCGCCCCAGAGGAAGGCTGCCCTCCAGATGGGAACTGGAAGAGACATGGAGATGCTTGCTATAAAGTAGACACTGAGCTTGTGTTCTATAAAAACAGCTGCCACATCACCATTAATAACAGATTTGAACAGGCCTTCATTAACAGTCTCCTGAAAGAGCATATCGGCAATGAAGTGTTATATTTCTGGACGGGGCTACAGGACACTAAAGGATCCAGGGAGTACCAGTGGATCAGTCAGGATGGGACAGCAGACCGGGTCACCTACACCAATTGGAAATGGCTAGAACCAGCTTTCCCCGGTGGCTGTGTGGTGATGTCTACTGGGAATCCTTTGGGCCAGTGGGTTGTTAAAAACTGCACTCTTTTCAAAGCTGGTAATATCTGTAAGAAACCCATAAAATCGATGGTCCATCCCACCCCAGATCCATTTGTGCCCAATCCCAATGCTTCCTGCGCTCCAGGATGGGTCTCAAAAGAAGGCCTAAACTACTGTTACAAGGTGTTTCATGAGGAACGTTTGACCCGGAAGCGCTCGTGGGAAGAGGCGGAGCGATTCTGTGAGGCGCTGGGCGGTCACCTGCCCAGCCTGACTGAGACTAAAGATATGCAAGCGTTACATTTAATCCTGAGAGACTCTATCAGTGATAATCGTTTTTTCTGGGTGGGACTAAATCGCCGAAATCCAAATAACAACAACAACTGGGAGTGGAGTGATGGGCGTCCGGTCTCCATGATGATCTTTCCTGAGGAGTTCAATGAAGATGATGCCTATAACAGGGATTGTGTTGCCTTTAAGACTTTGAAAGGAACCTACAGGCCGTTTCTCTACCTCCTCTTTCATAATGTTCTTCCACAGTCTTTTTATCCCAGCACCTTTCACTGTGACGCCAAACTGGAATGGGTGTGTCAGATTCCACGAGGTCAAACACCGAAAACACCAGAGTGGTACAACCCAGATGGGCACCATAACACATCAGTGTTTATAGATGGCCAGGAGTTCTGGTTTGTAACAGAGCCAAAGTTGTCCTTTGATGAGGCCATGTTGTACTGCAGCAGCAACAACAGCAAACTCGCTACACCCGCCAGCTTTAATGCGGCCCGCCAAATTCAGGATCAACTTCCTCAGCATTCAGGAAAAGACCTTGTGAAGTGGTGGGCAGACCTTCGTTACCCTGGTCCTCATGTTCCCTTTATGTTCACCCCCATGCACTACTATCATTCAGCGTTCCTGGGCAGGTGCCCTTCTATCACTGCTATTCATATTGAAGCCGGTTTCAGCAGAAGCTGTAATGAAAGACAGCCATTTGTGTGTGAGACCCTGAATGTCACCTCTGCAGAGAAAGGAACCCCAGAACCGCACACAAACGGCAGCCCATGTGAGAGCATTTCCCAGCACTTCAAAGACAAGTGCTACTGGCCTTTATCTCAGCCTTATTTCAGAAACTTCAAAGAAGCCAATGAGCTCTGCCAAACACTGAAAGGCACGTTGGTCACCATATCGGACCAAACGTTTGAACAGGACTCCCTGGAGCTCTGTGCCTACATGTACAATGATGATCATTCTGACATGATTGGCACCTGGGACTACACCTCCTGCTCTGACCGGCAAAATGTCAGCATCTGCCAGCATTATGCAGATAAACCAGAGGAACCTAAGCCTAAGGACAACTTCACGGTTCAAAATCATACATTTAAGGTGGTACAGCAGGACAATTTAACATGGACAGAGGCTCTTCAGTTGTGCCGGAGCAAGGATATGGACTTAGCCAGCATACCGAACACATATGTCCAAGCAGTGCTCACAGTGCAAGTTTCTCGAAGAGGACGGCCACTCTGGATTGGACTCTTTAGCGAAGACATAAGACCGTCACTCCTGAAGTGGATTCGGTCACATGTCCCCACAAAAGCAATGGACAGAACTGGATCCGCTTTAAGAAAAACTGCTACACTTTACTGCTGGGGTCCTCCAGCCGGGTATGGAGAAATCCTAACCATTCGTGATGAGACAGAGAATGATTTCATCATGCAGCAGTTGCAGCCGTTCAAAAGCTTGGTGGAGTTTGTGTGGCTGGGAATGAACAAGACAGATGAACAGCTGAAATGGCTAGATGGCAGCAATGTGCAGTTCTCCAATTGGAAATATGGTGAAAGACCAAACATCACAGAGCACTTCATGGCTGGCCTCAACATGATTGGAGAGTGGGAAATAATAACGAACCAACATAGGTTCAATGTCTTCAGACAGCGAAGTATTGTGGTGTGCAAGATTGAAAAAGATCCCAAAGATGAATTCATGAAGGATGTGGTTGACGTTAATGCTCCGGATGGCATTAGTTACCGTCGAGTGGCCAAGAAAATGGACTGGTATCAGGCACTGCAAGAGTGTGGTAGCAACGGAGGCCATCTTGCCAGCATTAGTAACAAAACGACTAACGACAACATGGCACTGATCGCCAAAAGGGACGGCTTTTCACTGTGGATTGGCCTCTCCAAACAAGATGTAAGCGGATGGCCCTATGAGTGGTCAGATGGGACCCCGGTAAAATTCAAACCAGATGGATTTGTGGATGACGGCCGTGATTCTGAGGAAAAGTGTGTGTTTGTTGACTCCAAAGGCACCTGGTCATCTGTTAACTGCCATGCAGCCCTAGAAGGGGCCATCTGCTACAACCACATCAGTGAGGGAACTAGTGCACAACTCTCTTCTCAGTCCAGCAGCAGTTGTCCTAAGAGTGATAGTCAGACCTCTTGGGTCCTGTTTAAAGATCACTGTTATGCTTTCAACTCGTACAACTACTCTGTCTTTACCATGGAGAGTGCCAAGAATGTGTGTCAGAATCTGGATTCTTCATCCAAGCTGTTAACCATCAAGAGTAAAGAAGAGAATGATTTTGTCTCCAACTATATGATTAAGAACCCTTCCATCACCAGCCGAGTGTGGCTGGCACTCAACATTGATGACAAAGGTAAGCCCACAAGTTGGCAGGACGGCAGTGCACTGGACTTCTCTAGCTGGGATGCAAAAAAAGGGCCACAATTATCACAGAAGACATCGCAGATCTGCGCAGTCATGGTCTCCAGCAACGGCATCTGGACCCAAGCCAGCTGCTCTGACAGCCGCAGCCGAATTGTCTGCAAAGCACCTGCCCATCCAGGTAGCCCTGTGGCCTTGATCTTCTTCATCATTGTCTTCCTCTGCATCGTCGGTGCAGTCTCCTTCATCTTATACCAGAAAAACAAGCATCGCTTCCATTCGACTGTACGTTACCAGCGCAACTTTGATGACGCGGACAGTACGAGTATGATCAATGATGCAGAATGACGCCTCAACTGAATGATGTCAAATTAAATGGTAGCTATGATGTGCCTTTTACTACAAACGCTCCTCTGTGCCATCAACAGAAACACCAGCTTCAGTGGTTCAAACTAAGGTTATTTATTATTATTGATCAATTATTCACACAGCATGGCTTCAATGGGACAGTTTGTGTAAATGAAAATAGGAGTGGTAATGTTTGGAGGTTTTAATATTTAAATTAAAATATCCGAAATGTTTGTGTGTATTTTAATGGGAGGACTGCTGGTACTTAAAAAGTTGATTGTGTTATTTTGGCTTTTCTTGAAATTGCGTTATTAAATCAGGGTTTTTCACTCCTCTTGAGCAGCACTGAATATTAACTTGCGCTTAGAGCTGGGTAGATTTTAAGATTTTGGGAGCTTTTCCTCTTTTCTTTTTGAAGATGTGATTTTAACAGAGCGTCAAGGATCCCAAAACTTTGTTTCATTCATTTCATTTGAAATTTATTTTTGCCCCCAAACTACACCAAAGATGATTTGGAAATTGATGGTAATATATTACAAACCCAAAAATGTTCACTAAAGACAACGCTGCTTTTGTAAAAATATTTTTTCTTGTCTTTGAATTGATTTACATATCACCTTTCCTCTGTTTTGACCACAGCAGAAGATACTCA

Function

symbol description
ly75 Predicted to enable signaling receptor activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in heart and macrophage. Orthologous to several human genes including LY75-CD302 (LY75-CD302 readthrough).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06559 LY75, CD205; lymphocyte antigen 75

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_01804273_01835065.mRNA True 5530 mRNA 0.46 33 1804204 1835717

Neighbor

gene id symbol gene type direction distance location
CI01000056_01780748_01797031 NA coding upstream 7162 1780748 ~ 1797042 (+)
CI01000056_01749027_01767554 ITGB6 coding upstream 36351 1748876 ~ 1767853 (+)
CI01000056_01720495_01737951 RBMS1A coding upstream 65455 1720495 ~ 1738749 (+)
CI01000056_01714213_01714936 NA coding upstream 89229 1713942 ~ 1714975 (+)
CI01000056_01306290_01314471 NA coding upstream 489578 1305876 ~ 1314626 (+)
CI01000056_01841169_01863442 MYOM2 coding downstream 5452 1841169 ~ 1863821 (+)
CI01000056_01873010_01874397 PTP4A1.L, TP4A1, PTP4A1.S, PTP4A1, PTP4A2 coding downstream 37293 1873010 ~ 1874752 (+)
CI01000056_01900971_01901584 HYLS1 coding downstream 65254 1900971 ~ 1901707 (+)
CI01000056_01926091_01928840 NA coding downstream 89958 1925515 ~ 1928956 (+)
CI01000056_01963536_01972044 INPP1 coding downstream 127819 1963536 ~ 1972600 (+)
G242946 NA non-coding upstream 118303 1679862 ~ 1685901 (+)
G242970 NA non-coding upstream 130481 1673492 ~ 1673723 (+)
G242969 NA non-coding upstream 130716 1673273 ~ 1673488 (+)
G242967 NA non-coding upstream 132500 1671339 ~ 1671704 (+)
G242965 NA non-coding upstream 134403 1669598 ~ 1669801 (+)
G242894 NA non-coding downstream 104739 1940456 ~ 1941386 (+)
G243010 NA non-coding downstream 119267 1954984 ~ 1955251 (+)
G242901 NA non-coding downstream 139070 1974787 ~ 1976411 (+)
G243017 NA non-coding downstream 156288 1992005 ~ 1992220 (+)
CI01000056_01059066_01060580 NA other upstream 741360 1058889 ~ 1062844 (+)
G241982 NA other upstream 1643254 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location