CI01000056_01780748_01797031


Basic Information

Item Value
gene id CI01000056_01780748_01797031
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1780748 ~ 1797042 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_01780748_01797031.mRNA
GACTGGAGAAGGAAGGACAACTGGTGTTATAAGATCACAGATCAGGAGCAAACGTTTGAGGATGCAGTGAGAGGATATTACTGCAAATCTCTTGTTACTGTAGAAAGCAGGTTTGAGCAGGCTTTTCTAAACAGTCTGATCAGTGAAATGGGAGGCTCTGATTCCCAATCCTACTGGACAGCTCTGCAGGACCAGAAAAGAAATGGAGAGTACAGCTGGCTGACCTGGGACAACTCGTCGACACCCCTCAACTACAACAACTGGAACCGACACCAGCCAGTGAGTATTGGGGGGTGTGTGGTGATGTCTGGGGGTCAAGCACTGGGTCGCTGGGAGGTGAAAAATTGTAACACCTTTAAGGCCCTGGCTGTGTGCAAACAGGAAGTGAGCGGTAACAATGACACCCTGATGCCTGTGCCACACATAGATATAAATTCACCATGTCCAACAGGATGGGAGAGCCGCAAAGGCCTGTCTCACTGTTACAAGGTGTATCACAGTGAGAAGATCCTGATGCAGCGCACCTGGAGCGAGGCTCAGTTCTTCTGCCGGGCTTTGGGTGCTGATCTGGCCAGTTTCCACCACTATGAAGATCAGGCTTTTGTCAAAAATCTCCTCTCCACGATGTTCCAAAGTACAGAGGGTCGCTGGTTTTGGGTGGGCTTTACTAAGAGAAACCCTAGGTCCAACGGAGCCTGGGAGTGGTCAGATGGCACACCGGTGGTGACATTTTTCATTGAGGATATGAATGAAGTGGACTCTCGCATGTGTGCTGTGTACAGTGACCTCACAAACACTCTCACGCCCCACTCATGTGACTCCAAATATGAGTGGATTTGCAAGGTCCCCAGAGGTGTGGAGTTGGTCAAGCCGTACTGGTATAGCGACCAACTTGAGCCATGGGTGTTTTTCCGTGGAGCTGAATATTACTTTGCCAGTAAGCCTTTTCCCTGGGAGGCTGTTGCCTTCGCCTGTAAGATGATGGGTGCTGATCTTCTCTCTGTTCACTCTAGCGATGAACTGAACTTCATCAGAGATCGCATGAAGGACTCTGAATATTGGTGGATTGGTTTGTCTGCTAACAATAATCACAATGGCTTCAGTTGGACTGATGGATCCGCTCTGGATTATGAGAACTGGGAAAATGGTCGTTTTTCCCGAAAGCCTGGCCAAAACTGCATCCAAATGTCGTCTCAGTCCGGTCAGTGGTCGGCAGGAAACTGTAAAGATCTTCATGGTTACGTGTGCAAGCGCAGAACGGTGTCTGTATTGGAAGACCATCGTGAGCCTCACTATATCGGCAGCTGCCCAGAGAACTGGTTCTACTACGGACGCAAGGTTCTTGTGTTTTATTGTATGATTGAGAATTGCTTGTTTGTGATTGGTTGCCAGTGTCTGTTTCTGCATCTCCCAGCCCATCCGGAAGAGGGGAAAACATGGCAGGAGGCTCAGACCAAATGCTTATCCTATCAGGGATCTCTGGTGTCCATAGAGGATGAAATCGAACAAGGTACGGCCTCACTCTGTGATGGGTTGATCGAGGGAAAAAGGGAGGAGGTTCTGGAGGTGGACGAGGGACTGGCGAGGTGCTGGAAACCCAATGGGGGCCAAATGGGAGGAACCAGGGCAGAACAGATGGTGGGAGAAGCCATGGAGGAAATGATGGGAAGCACCATGGAGGAGTTGATGGTGGGAGAAGCCATGGAGGAGATGACAGTAGAAAGTGGAGGCGGGGCCAAGGGAATGGTTGGCTTTGGTGGAGCAAACAGGAGAGGAAGGTTGGGTGTGGACACAGACTTGATAGACAGGAATGGTGGCGACAAAGACAATACTGTGCTGGACAGAACTTGCAGCGATTACAAAGACAAATCTGTGCTGGACGGAACCAGTGGTGATGAAGAGACATTAGTGCAGGAGGGGACCAGTGACAGAGAAGCCTACATCGTCATGCTGCTTCATGGCAGGTCAGCGGGGGTTTGGATTGGTGCACAGGGGCGTTTTTCTCCCAAATGGAGCAACGGGAAGCCAATCGTCTATGATAACTGGGAGAGGTCTAATTATATATCTCCTATGGAACCTCATTGTACTTACCTGTCCAACAGTCACATCTTCCGTATGACAGGGGTATGGCAAGATGATGTCTGTACTGAGAGCATCTATGGCTTTGTCTGCCAGAAGCAGCAAGACATCACCAAGCGTCCAACCCAGCCCTATTACACCGCTTCCTCTCTGGACTCATCTGAGTATAAGAACCACAGTTACCGTATCATCCATGGCAACTTGAGCTGGTACAAGGCCCAGAAAGCATGTTTGGAAAAGGGGGCGGCGCTTGTGAGCATCACAGACCCGTATCATCAGGCCTATCTCACTGTGCTCATGAACAGGCTTGAAGCCCCACTTTGGATTGGCTTGTACAGCACAGATGATGATACATCTCACCAGTGGTCCGATGGCAGTGAGGGATCGTTTACTCACTGGGAAATGCCAATGGGAGATGGAGGCTGCGTGTTCATGGATGTTAATGGACGCTGGAAAGATGCCGAATGTGACATGCCATTATCAGGAGCGATATGCTACATACCTCCTCCGAAAAGCATTGCTTTCTCCTATGAAGTGGTATGTCCTGAAACCTGGCTGAAGTTTCGTGGGAGCTGCTATTATTTTAAAAATTTTGTAACAAAGATGACCCTGGAGGAAGCAAGAAATCACTGTAAAAAGAATGGAAACTCTTCAGACCTTCTGACAGTTCAAGATGATGAGGAGAGCCGGTTTGTCCTTAACGAGTTGGGGCGTTATTACAAGGGGCCTCGGAAAATGTGGCTAGGAGTTTTCTACAACACTGACAAGGACGCTTTGACTCGACTGGATGGCTCGCCGCTCAAGTACACTTACTGGCGCTCCAAAGCTCCAGATCCAAGTGTCATGAGGGCTGGTCTATGTGTGACTATGCGGATATCAGACGCTGTGTGGCAGTTAGCCAACTGCACTGACAAACAGGGCTTCGTCTGCAGAACCTCATCAGTGGGGATCGAAAGTTTGGGCACCCCAGGAGCCATCAAAGAGGTAGAAGTGGAGCCCTTGAAAGGTCTGCATCGAGGTGTGATCTCAGTGGCGGCTTTGGTGGCCGTTGTGTTGTTTGTTGTGATGATTGGATCACTGTGGCTCCTTTACAAGAGAAACTCGCTGTGCAACCAGAGGCTTCCAACATTTGGCAGTGCCTATTACAGACAGACAAGCTCCCATGCCAGTGAACAAGATGAAAATGTTTTACTCCCAGACCTAGAGACATGAGCGGGGGACTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_01780748_01797031.mRNA True 3302 mRNA 0.50 24 1780748 1797042

Neighbor

gene id symbol gene type direction distance location
CI01000056_01749027_01767554 ITGB6 coding upstream 12895 1748876 ~ 1767853 (+)
CI01000056_01720495_01737951 RBMS1A coding upstream 41999 1720495 ~ 1738749 (+)
CI01000056_01714213_01714936 NA coding upstream 65773 1713942 ~ 1714975 (+)
CI01000056_01306290_01314471 NA coding upstream 466122 1305876 ~ 1314626 (+)
CI01000056_01059066_01060580 NA coding upstream 720134 1058889 ~ 1062844 (+)
CI01000056_01804273_01835065 LY75 coding downstream 7162 1804204 ~ 1835717 (+)
CI01000056_01841169_01863442 MYOM2 coding downstream 44127 1841169 ~ 1863821 (+)
CI01000056_01873010_01874397 PTP4A1.L, TP4A1, PTP4A1.S, PTP4A1, PTP4A2 coding downstream 75968 1873010 ~ 1874752 (+)
CI01000056_01900971_01901584 HYLS1 coding downstream 103929 1900971 ~ 1901707 (+)
CI01000056_01926091_01928840 NA coding downstream 128633 1925515 ~ 1928956 (+)
G242946 NA non-coding upstream 94847 1679862 ~ 1685901 (+)
G242970 NA non-coding upstream 107025 1673492 ~ 1673723 (+)
G242969 NA non-coding upstream 107260 1673273 ~ 1673488 (+)
G242967 NA non-coding upstream 109044 1671339 ~ 1671704 (+)
G242965 NA non-coding upstream 110947 1669598 ~ 1669801 (+)
G242894 NA non-coding downstream 143414 1940456 ~ 1941386 (+)
G243010 NA non-coding downstream 157942 1954984 ~ 1955251 (+)
G242901 NA non-coding downstream 177745 1974787 ~ 1976411 (+)
G243017 NA non-coding downstream 194963 1992005 ~ 1992220 (+)
G241982 NA other upstream 1619798 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location