CI01000056_01720495_01737951 (RBMS1A)


Basic Information

Item Value
gene id CI01000056_01720495_01737951
gene name RBMS1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1720495 ~ 1738749 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_01720495_01737951.mRNA
CTAAAGCAGATTTATGGAGAAATCGCAACTCTCAGTATGAATGAACATGCCTCTGTGAGGCGTCCTGATCCCACATGTATTCCGTTCAAGCATTCCCACTGTGGGTTAATTTACCCCTTGCTGCCCTCGGGATACCAGTCATCACCATGCAGATATGGTAAAATCGTGTCCACCAAAGCCATTCTTGACAAGACTACAAACAAATGCAAAGGATATGGGTTTGTGGATTTTGACAGTCCAGTGTCCGCGCAAAAAGCCGTCACAGCACTAAAGACCAGTGGAGTTCAGGCTCAAATGGCCAAGCAACAGGAGCAGGACCCAACTAACCTGTACCTGTCCAACCTGCCCGTGTCTATGGATGAGCAGGAGCTCGAGAACCTTCTCAAACCCTTTGGACAGGTTGTGTCCACCCGAATCCTCCGCGACACTAATGGAGTGAGCCGGGGAGTGGGCTTTGCCAGGATGGAGTCTACAGAGAAGTGCGATGCCGTGATCTCTCACTTCAACGGGAAGTTCATAAAGTCCTCCTCTGGGATGCTGGGTGCATCAGAGCCTTTGCTGTGTAAGTTTGCTGACGGCGGGCAGAAGAAGAGACAAAGTCAGGCTAAATATGTCCCCAATGGACGAACCTGGACACGGGACGCCGAGAGTGGAATGACCTTGACCTATGACCCAAATACCGCCCTTCAGAATGGGTACTATGCTGCTCCTTATGCTATGGGGAACCGGTTAATGGCTCAGCCAGGAGTGTCTCCATACATCTCTCCCATCTCTACATACCAGGTACAGAATCCTTCATGGATGCCACATCAGCCTTACATCATGCAACACCCAGGAGCCGTTCTGTCGCCCTCTATGGAGCATCCCATGTCACTGCAGCCGTCCGCTATGTTGGCTCCTCTCACCCAGCAGATGGGCCATCTCTCTCTGGGCGGCACTGCAACCTTTATTCCTGCCAACACAGCAATGCCAGGAGCTTACATCCCTCAGTACGCCCATATTCAGCCCGCTGCCATCCCTCCTGAGGTCAGTCCCACACTCAGCAGGAAGGTGGTGTACAGCCACAAGATGTGTCCTCTTCGGATCCTTCATCGTACACTTTCCAACCCAACAAGCAATAAAAAGGTATTCGATTATCATCTTTTTATTCTTGTTCTTGTGATGGTTAACCATCTGAGGTCACAGCCAGACACAGTCTGCTGAGTGTTGCTACGGTAACAATGTTTGCTTTCTCTTGGAGGGAGTGACATCAGAGAGGAAGTGACGCTCGTGCACGGGTTCCAGAAAATTTGTCCATGATTTAATCATCTACTAAAAGAAATCAACAAGAAACCTCAGAAAACTCTTGTGCAAACATTTTCTCCAATACATCAAGACGAGGCAATATCACATCAACTATGGACAACAAAGGGGAGCAGAGTTTTATTTTGCTAGAAAGAGGAAGGAGAAGATGACAAATGCTTATTTTTTACCAAGAACTTTTAACACAGACCATGTCTGTGAAACAGTGAGTGATTATGATGGTGATGACACCTTTCGATGCATGATGTTTTTTTAAATATGGTTTTTATTATGTTTTTACGGACTGTTTCTCAAACAGACGAAAGAAAAATTTTGTGGTTGCAGTCGATATGAAGAGGTTTCTGTTTGCTTTTTGGTCTTCCACTCTTTGCCTTTTTAGTAGTTTGAATAATTACCTTTTAAATAAGGTGGGTGGGGTTTAGAATGACTAATGCAATGCTTGCTGGCTATTGGTCCTTACTCCTGTCTCTCAAAGCAATTGCTTTCCTGTTTCCTTTTTTTAATGTTGCTCTGAATCATACATGTTTTGCTTCAGAGATTGTGTGTCTGTTGTTGATGAGTCTTCTTTCCATTGAATTCATGTGTAAAGTCTTTTGGTAGATTTAGAAGTGGATGTTGAGACAAGGGTGGGTGGGGTTTTGTGGGAGGAGGGGCATTAGTGGGTGGGGTTATGCTAGCTGAGGTATGTGGGTAGGGCTA

Function

symbol description
rbms1a Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Orthologous to human RBMS1 (RNA binding motif single stranded interacting protein 1).

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_01720495_01737951.mRNA True 2001 mRNA 0.46 14 1720495 1738749

Neighbor

gene id symbol gene type direction distance location
CI01000056_01714213_01714936 NA coding upstream 5520 1713942 ~ 1714975 (+)
CI01000056_01306290_01314471 NA coding upstream 405869 1305876 ~ 1314626 (+)
CI01000056_01059066_01060580 NA coding upstream 659881 1058889 ~ 1062844 (+)
CI01000056_00601216_00610322 TBL1XR1.S, TBL1XR1A, TBL1XR1, TBL1XR1.L coding upstream 1110090 600353 ~ 610405 (+)
CI01000056_00376962_00378136 ARPC4 coding upstream 1341987 376962 ~ 378508 (+)
CI01000056_01749027_01767554 ITGB6 coding downstream 10127 1748876 ~ 1767853 (+)
CI01000056_01780748_01797031 NA coding downstream 41999 1780748 ~ 1797042 (+)
CI01000056_01804273_01835065 LY75 coding downstream 65455 1804204 ~ 1835717 (+)
CI01000056_01841169_01863442 MYOM2 coding downstream 102420 1841169 ~ 1863821 (+)
CI01000056_01873010_01874397 PTP4A1.L, TP4A1, PTP4A1.S, PTP4A1, PTP4A2 coding downstream 134261 1873010 ~ 1874752 (+)
G242946 NA non-coding upstream 34594 1679862 ~ 1685901 (+)
G242970 NA non-coding upstream 46772 1673492 ~ 1673723 (+)
G242969 NA non-coding upstream 47007 1673273 ~ 1673488 (+)
G242967 NA non-coding upstream 48791 1671339 ~ 1671704 (+)
G242965 NA non-coding upstream 50694 1669598 ~ 1669801 (+)
CI01000056_01926091_01928840 NA non-coding downstream 186766 1925515 ~ 1928956 (+)
G242894 NA non-coding downstream 201707 1940456 ~ 1941386 (+)
G243010 NA non-coding downstream 216235 1954984 ~ 1955251 (+)
G242901 NA non-coding downstream 236038 1974787 ~ 1976411 (+)
G243017 NA non-coding downstream 253256 1992005 ~ 1992220 (+)
G241982 NA other upstream 1559545 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003242 rbms1a coding NC_007122.7 CM002895.2 10909183 ~ 10960394 (+)