G243022


Basic Information

Item Value
gene id G243022
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1995150 ~ 1999442 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU275822
CTGATAGTGACGTGAGCAGCCTGAACCAGACGATGTGCTTTACTCTTCAAGCCCGTGTAAATCTGACCCATTTCCACAACGCTCTCCAGCCCAACAACCTCTAGGAGTTTATCATTCATGTCTACAAGCATAAACACAGCATTTAGTGTGAAAGACTACGTCAAAACTGATGATGGCGACATTTTGCCAACAAAGGCAGCATCAACATACACAACCATGAATTATATTTGAAATCAAAATTGACTATTAATACACATTCCTAATCTTAACATGTGCTCATAAATGTTTTTCTGTTTATTCCTTCTTCAAAATGTAATAACTTGCTCTGAAACGCCTTTCCTTTTTCAGCTTAAGCCATATTGGGCCATTTATTTTACAACCACATTCTTATAGAGAGAACTTTTGAAAGAATCAGTTCCTGATGATTTAATTTAATATTTTGCTTTGTTTGGGAATGTCAAATATGTGGTATAAGCTATATAAATAATGTCCAGTTGATTTAAATATTGAAAAATTAAGAAATAATGGTAACACTTTAGGGTATTTTAATTAGTTGCTTATTAGCATGCATATTACTAGAATATTAGCTGCTTATTAGTAATTAATAAGCAAATATTAATGCCTTATTCTGCATGACCTTATTCTATATTCTTAATCCTACCCAATACCTCAACTTAACAACTAACTTACTAACTATTAATAAGCAGTAAATAAGGAGTTTATTGAGGGAAAAGTCGTAGTTAATAGTGAATACATGTTCCCTATACTAAAGTGTTACCGAAATAATTTTACAAGAAATAATATTAAGACCTGCAGCATCATAAATGACCTAGATTTTTAACAAGTTTTCCTATTTATACCAGCATATTTAACTAAATAGGCTTTCAATAAAAATGTCTTCAAAATGTGTTTTAGGGGCGCAACGTTTCAGATTACTCACGGTTCGGTTTGTATCATGGTTTTAGGCTCACGGTTTCGGTACGGTTCGGTATGTGCTATGTTTGCGTGCGCGCTTCGGATGAGTGCACAAATCTTCTCACAGAGCTCGCGCAAGTTCTCTTTCACGCCTTGCACTCGAATGTTTAAATTGGCAAGGCTTAAATGAGTTTAGTTTAAACACAGATAGTAATGTGTGCTGTTCAGGTCTTACCTGCGCTCGTGCGCTATCAACACCCGGGTGATGACGGCGAAATGACTGATCATATAGAGCATACGGCACTCGCATTGAACAAAGTTTAGGGGAAGCCAGAATGCATATCCATCAACAGAAACATACATTAGACTAACTCTGTCTGTCTGTTTTATTTATTTTCTGCAAACCATATTATAGATGCGTATGCATCATCAGATATGATATGAACTGCGGTGCAAGTGCGTGCCGAACCGAGTGTGCAGAACGGTACGGTTCGATTTTTTACCGAGAACCGTTTCACCCCTAGTATGTTTGTAACAAATCTGCATAATGCCAGTCTATGGTCTTCATTGGCTGGTTGTGAACAATGCCTACTTCGACCCTCAAACACTGTAGTTGTATCTGAGACCTGAAGAGTTTGGTTCATGTTGTTCCATGTCGAGAAGACGCTGTTTTCTGCTGCCAAAGCAAATCCACTTTGATGAGGTTAATACGGTAAAACAGATGCCATCGTTACTGTTCATATCACTGTGTGTCAAGTGCTGAGGAAGAGCTGAGATTCAGATATGATCATGAGTGTTTGGTTTCTGACACATACTGTAAGCAGTCGACCAATCACAACAGACTGGGCCATCTGACCAATCAGAGCAGAGCAGCTCTCAGAAAGGCGGGGTTTAGAGAGACCGAATCCTTGATCGAACCGTTTCAGACACTGTGAGAAAAGAGCTGATGCTGCAATTGATATTATAAGAAGACTAAAGTGTTTTTGACCTTAAATGCATGTAAACCTGTTGTAGGAGACTCCAAAACAAAATTAGGAACCTTTAAAATAGCATAATAGCGGACCTTTAAGTAAGCATCTAACTTTAAAAATGGCAGTGTTGTATATATTTTTTTATTGTAAGAAACATTTGCTCACCCTGTGAGCACATCTCAAGAGCATCAGCATCAACAGTGACCTCTTGCCACTTCTTTAGTCTCTCAACACTCTTTGTTTCTCCCCACAGGTTTGAACCGCCGTGCATGCTGGGAATGTTCAGGACAGCAACACCCTCCAACGAGAGTCTGCTAAGATCAACAGGAATGCCACAACACTACAGGGACAGAGATTCATCAAACTCATTTTGAAACACCTCAGTGACAGTGAGATACATAAAACTGACACAAATAAGGCAAGAGACAAGCATATAAATAAACTACTACTCAGGTCAAGAGTATTTATACATACATGTAAGGTTTGTCACATTCGGCTTGATTTTTAGTTTTTCGTTCCAGGGTAGAAAATGATAAACAACTTGAACATTTGATCTCTACATGAAGTATCAGTATCATACTAGTATCGGTATCGGTGCATCCCTAATCGCAGCGAAGGACTATTATTCTGCTGCACGGAACTGCAGAAGAACTGATGACAGCATGGTTTAATGTTTGGTTGACCAATCAGCGGAAAGGGGTGTTTCATTCCCGCCCACATGTAGAGATCAAATATTCAAGTTGTTTATCATTTTCTACCCCTGAACGAAAAATCAAGCCGAATTATTGTTTTTCGTTTTGTTTGAAAAAAAATGAAAAATGAAAAAAGGTGCCGTTTTTTCATTTTCCGATTTCAATATAAATCAAAAAACGAATGACCAAAAGATACACGGACCAAACATAAACATTTCCACAACATTTACCTCGATGCTGAGACATTCCTTGAGGTTCCTGCAGGAAGCTGAAATGGTCTCGGATGTTGCGAGTTGAAAATACCACAGCTTATTTCTGGCTCTGCTGTTGAACTTCTGTGGATCCTTCTCTCTCATCACATGAAACTGGTGTGCTATAGATGCGTCCACACCGATAGAGAAATAGTTGTTGATGATGTCATTAGGCAGTGGGTCGCCATCGTCTGCCAGATCAGCTTGAATGACTTGCAAACTCCAGCGATCCATCTGCACTAGTGTGCTCTCCTCGATCTGCTTAAGGATTTCTGTCAGATCACTGCCTTCATATCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU275822 True 3127 lncRNA 0.39 3 1995150 1999442

Neighbor

gene id symbol gene type direction distance location
CI01000056_01963536_01972044 INPP1 coding upstream 22550 1963536 ~ 1972600 (+)
CI01000056_01926091_01928840 NA coding upstream 66194 1925515 ~ 1928956 (+)
CI01000056_01900971_01901584 HYLS1 coding upstream 93443 1900971 ~ 1901707 (+)
CI01000056_01873010_01874397 PTP4A1.L, TP4A1, PTP4A1.S, PTP4A1, PTP4A2 coding upstream 120398 1873010 ~ 1874752 (+)
CI01000056_01841169_01863442 MYOM2 coding upstream 131329 1841169 ~ 1863821 (+)
CI01000056_02009618_02014292 NABP2 coding downstream 10176 2009618 ~ 2014605 (+)
G243017 NA non-coding upstream 2930 1992005 ~ 1992220 (+)
G242901 NA non-coding upstream 18739 1974787 ~ 1976411 (+)
G243010 NA non-coding upstream 39899 1954984 ~ 1955251 (+)
G242894 NA non-coding upstream 53764 1940456 ~ 1941386 (+)
G243043 NA non-coding downstream 62395 2061837 ~ 2065826 (+)
CI01000056_01059066_01060580 NA other upstream 932306 1058889 ~ 1062844 (+)
G241982 NA other upstream 1834200 155068 ~ 160950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000789 LOC102295795,LOC102199121,LOC101478098,LOC102798094 coding CM030137.1 CM030137.1 3437283 ~ 3482542 (+)