Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006390 |
| length | 847 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 6 |
| gene id | XLOC_003243 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 10975012 ~ 11020857 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| GO:0016477 | cell migration | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0007160 | cell-matrix adhesion | biological_process |
| GO:0033627 | cell adhesion mediated by integrin | biological_process |
| GO:0034685 | integrin alphav-beta6 complex | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0008305 | integrin complex | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0005178 | integrin binding | molecular_function |
| id | description |
|---|---|
| ko04151 | PI3K-Akt signaling pathway |
| ko04512 | ECM-receptor interaction |
| ko04510 | Focal adhesion |
| ko04810 | Regulation of actin cytoskeleton |
| ko05165 | Human papillomavirus infection |
| ko05410 | Hypertrophic cardiomyopathy |
| ko05412 | Arrhythmogenic right ventricular cardiomyopathy |
| ko05414 | Dilated cardiomyopathy |
| ko04147 | Exosome |
| ko04515 | Cell adhesion molecules |
| id | description |
|---|---|
| ZDB-GENE-100812-2 | Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin alphav-beta6 complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including adaxial cell; liver; musculature system; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1H. Orthologous to human ITGB6 (integrin subunit beta 6). |
| ensembl_id | ENSDART00000160488 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008552 | lncRNA | upstream | 302473 | 10669135 ~ 10673008 (+) | False | XLOC_003241 |
| TCONS_00008553 | lncRNA | upstream | 302473 | 10669452 ~ 10673008 (+) | True | XLOC_003241 |
| TCONS_00006385 | lncRNA | upstream | 438078 | 10535456 ~ 10537403 (+) | True | XLOC_003239 |
| TCONS_00008551 | lncRNA | upstream | 1372411 | 9601745 ~ 9603070 (+) | True | XLOC_003237 |
| TCONS_00008550 | lncRNA | upstream | 1453722 | 9520744 ~ 9521759 (+) | True | XLOC_003236 |
| TCONS_00008390 | lncRNA | downstream | 76951 | 11065500 ~ 11065792 (+) | True | XLOC_003244 |
| TCONS_00006406 | lncRNA | downstream | 250899 | 11239448 ~ 11240944 (+) | True | XLOC_003247 |
| TCONS_00006410 | lncRNA | downstream | 279357 | 11267906 ~ 11272314 (+) | False | XLOC_003248 |
| TCONS_00006420 | lncRNA | downstream | 364910 | 11353459 ~ 11380887 (+) | True | XLOC_003252 |
| TCONS_00008391 | lncRNA | downstream | 370872 | 11359421 ~ 11359715 (+) | True | XLOC_003253 |
| TCONS_00006388 | mRNA | upstream | 15087 | 10909183 ~ 10960394 (+) | True | XLOC_003242 |
| TCONS_00006386 | mRNA | upstream | 425104 | 10541258 ~ 10550377 (+) | False | XLOC_003240 |
| TCONS_00006387 | mRNA | upstream | 425106 | 10548171 ~ 10550375 (+) | True | XLOC_003240 |
| TCONS_00006380 | mRNA | upstream | 2293034 | 8660158 ~ 8682447 (+) | True | XLOC_003233 |
| TCONS_00006378 | mRNA | upstream | 2300992 | 8565828 ~ 8674489 (+) | False | XLOC_003233 |
| TCONS_00006392 | mRNA | downstream | 32847 | 11021396 ~ 11075105 (+) | False | XLOC_003244 |
| TCONS_00006393 | mRNA | downstream | 33186 | 11021735 ~ 11039478 (+) | False | XLOC_003244 |
| TCONS_00006394 | mRNA | downstream | 42359 | 11030908 ~ 11109963 (+) | False | XLOC_003244 |
| TCONS_00006396 | mRNA | downstream | 131983 | 11120532 ~ 11193205 (+) | False | XLOC_003245 |
| TCONS_00006395 | mRNA | downstream | 131983 | 11120532 ~ 11193205 (+) | False | XLOC_003245 |
| TCONS_00006384 | other | upstream | 1076851 | 9898513 ~ 9898630 (+) | True | XLOC_003238 |
| TCONS_00006353 | other | upstream | 3701103 | 7262004 ~ 7274378 (+) | False | XLOC_003222 |
| TCONS_00006343 | other | upstream | 3824575 | 7150820 ~ 7150906 (+) | True | XLOC_003218 |
| TCONS_00006342 | other | upstream | 3824841 | 7150547 ~ 7150640 (+) | True | XLOC_003217 |
| TCONS_00006341 | other | upstream | 3825115 | 7150274 ~ 7150366 (+) | False | XLOC_003217 |
| TCONS_00006409 | other | downstream | 279341 | 11267890 ~ 11274557 (+) | False | XLOC_003248 |
| TCONS_00006412 | other | downstream | 283385 | 11271934 ~ 11274600 (+) | False | XLOC_003248 |
| TCONS_00006417 | other | downstream | 357254 | 11345803 ~ 11346099 (+) | True | XLOC_003250 |
| TCONS_00006423 | other | downstream | 384337 | 11372886 ~ 11373182 (+) | True | XLOC_003255 |
| TCONS_00006426 | other | downstream | 397813 | 11386362 ~ 11386658 (+) | True | XLOC_003257 |
