RNA id: TCONS_00065215


Basic Information

Item Value
RNA id TCONS_00065215
length 1802
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_033074
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40856139 ~ 40864078 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGTGCCTCCTGAGACTCTCAAAGGGAACAGTGGAGATATACTTGGAGACCTGGAGCTCAACAAacaggtagaactgcttgaacagactgaacaatggagttagtttccaatatatattgtattaagATTAATTAAAGACTTGACATCTTTCTTTTTGGCAGATTGGCATGAAGCACGTGGAGGAACAGGGAAACACCTCAGTAATGACAAAGTGAGTGTCACAGAAGGGACGGGATTCAGGGGAGTAATATGAAAGCTGTCTATTTAAAGGATGGCAGGCTTGGAAACTGGAGACGGATACCACAGATGGCAAACAGGACGAAGAACAGACCAGGAACCAGGAGATGTCACACTAGGAGAGACATGGAAGACAAAAAAGATGCAAGTAAACTGCTACCTAAGAATCAACACTGACGGTGTATAGGGAGTTCAGTCCTTTCTTTACTAGCGAAGAGGCTAAACACTGAGTAAATGTGAGTGGAGTCTTTATAGTGCTGTGATGATTTCGGAATTCTGACATACTGCATTTGCCATTTTATCATGGTCACGTgccctacctgcgtcagttgcgtcgctttactcctattcatgaattctctcgcggggcatcatggggtAGCGCAGCGTgtatgggatgcgcacttcagaatctcgccagaagtagtaagtcatccgggtacttctcacattcTGATTTTCGAATTtcatgaattcggacatactactcagctcgcattctgattttagcgtactatataatatggaagtatgcggtttctgACGCAGCCCTGGTCTTACTGAGACAGGAAGTCATGTTCAGGTATTTTCTTCTTGTATTTTGCAGATTTTAATGGACCACATGGAGAAAAAGGGAATTACTTACCTCATCAAAGACTGGATGGtcaggaatttatttattttttaaaaatcagatggACAGGTGAATTGATGGACATCCTTTCAAGATGGAGTAGTGGTTGGTAGAGGTAGTAATTCGGCCTTGTCTGTGtcagatttttctttttcaggtaatggagaGAGAGCAGACAGAAGAatgagactcacaagagcatcgtgGGACATTTCTCTAAGAAATGCTGGAAAACAGTAGGTAGGGCTCTGTCAGTGCTGTCAGTAAGTGTTTTATTTGGGAAGACACTACATTCACACACTATACCattaagtgtgtaagtgcatgagtACATGGCGTATAAGTTCATAGTGTATAATGTGCCATTTGGGAAACAGCTTTTGTCTTTTCCAGGTTGGAGTGGAGTAGAGGCAGGAAACTCACAAGGGGAACGGTGGAGATATACttgaagacctggagctcaggaagcaggtagaactgcttgaacagtctgaacaatggagttagtttaaaaaatgcattgagatTAATTAATGACATGACATCTTTTTAGTGTATTTTGCAGATTTTAATGGACCACATGGAGAAAaagggaatcacacacctcagcaactACTGGAAATTGATGGTCatgaatttctttaaaaaaaaatctgagtgcATGGATGGACGATCTTTCAAGATACAGGAGTGGTGGTTGGTATAGGGAGTAATTAGGCCTTGTCTGTGTCgggtttttcttttttaggtaatggagagagagcaggcagaagagggagactcaTAAGTGCATTTGGGGAGAACAGCACGTAGGGTTTTGGGCGAGCCGTCTTTGTCTTTTGCAGGTTAAGGTTGAGCAGCAGAAGGAGACTCACAAGGAGAAAGGTGGAGATATACTTGGAGACCTGGAGCTCAGGAagcagattggca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065212 lncRNA downstream 198972 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 201196 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 231135 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 231174 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 287064 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065216 lncRNA upstream 99965 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 162507 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064291 lncRNA upstream 222887 41086608 ~ 41091181 (-) False XLOC_033082
TCONS_00065217 lncRNA upstream 222908 41086629 ~ 41091448 (-) True XLOC_033082
TCONS_00065218 lncRNA upstream 587949 41451670 ~ 41452888 (-) True XLOC_033085
TCONS_00064266 mRNA downstream 5838 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA downstream 8797 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064265 mRNA downstream 17528 40841156 ~ 40842768 (-) True XLOC_033072
TCONS_00064264 mRNA downstream 28051 40822587 ~ 40832245 (-) True XLOC_033071
TCONS_00064262 mRNA downstream 88483 40769517 ~ 40771813 (-) True XLOC_033069
TCONS_00064268 mRNA upstream 13673 40877394 ~ 40884453 (-) False XLOC_033075
TCONS_00064269 mRNA upstream 14169 40877890 ~ 40882880 (-) False XLOC_033075
TCONS_00064270 mRNA upstream 14170 40877891 ~ 40885496 (-) False XLOC_033075
TCONS_00064271 mRNA upstream 14283 40878004 ~ 40884465 (-) False XLOC_033075
TCONS_00064272 mRNA upstream 20894 40884615 ~ 40899618 (-) False XLOC_033075
TCONS_00064263 other downstream 40530 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064261 other downstream 92625 40762757 ~ 40767671 (-) True XLOC_033067
TCONS_00064247 other downstream 192833 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064246 other downstream 204008 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 204211 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064277 other upstream 82636 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 216576 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1545736 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1546503 42410224 ~ 42415662 (-) False XLOC_033096
TCONS_00064314 other upstream 1551645 42415366 ~ 42415879 (-) True XLOC_033096

Expression Profile

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