Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006497 |
| length | 845 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_003320 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 12719944 ~ 12728353 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0030117 | membrane coat | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-5448 | Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of membrane coat. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 5. Orthologous to human AP1S2 (adaptor related protein complex 1 subunit sigma 2). |
| ensembl_id | ENSDART00000135761 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006494 | lncRNA | upstream | 1769 | 12718109 ~ 12718402 (+) | True | XLOC_003319 |
| TCONS_00008394 | lncRNA | upstream | 197142 | 12522770 ~ 12523029 (+) | True | XLOC_003307 |
| TCONS_00006480 | lncRNA | upstream | 225994 | 12493872 ~ 12494177 (+) | True | XLOC_003304 |
| TCONS_00008393 | lncRNA | upstream | 253111 | 12466766 ~ 12467060 (+) | True | XLOC_003302 |
| TCONS_00006458 | lncRNA | upstream | 553381 | 12166486 ~ 12166790 (+) | True | XLOC_003282 |
| TCONS_00006501 | lncRNA | downstream | 17106 | 12744635 ~ 12752361 (+) | False | XLOC_003321 |
| TCONS_00008574 | lncRNA | downstream | 54686 | 12782215 ~ 12785059 (+) | True | XLOC_003322 |
| TCONS_00008395 | lncRNA | downstream | 152198 | 12879727 ~ 12880871 (+) | False | XLOC_003325 |
| TCONS_00008396 | lncRNA | downstream | 161762 | 12889291 ~ 12889880 (+) | False | XLOC_003325 |
| TCONS_00006518 | lncRNA | downstream | 424390 | 13151919 ~ 13152385 (+) | True | XLOC_003329 |
| TCONS_00006460 | mRNA | upstream | 535628 | 12175162 ~ 12184543 (+) | False | XLOC_003284 |
| TCONS_00006461 | mRNA | upstream | 535911 | 12176327 ~ 12184260 (+) | True | XLOC_003284 |
| TCONS_00006456 | mRNA | upstream | 627993 | 12052791 ~ 12092178 (+) | True | XLOC_003280 |
| TCONS_00006455 | mRNA | upstream | 740317 | 11974708 ~ 11979854 (+) | True | XLOC_003279 |
| TCONS_00006454 | mRNA | upstream | 870176 | 11842724 ~ 11849995 (+) | True | XLOC_003277 |
| TCONS_00006499 | mRNA | downstream | 17046 | 12744575 ~ 12770546 (+) | False | XLOC_003321 |
| TCONS_00006500 | mRNA | downstream | 17088 | 12744617 ~ 12768627 (+) | False | XLOC_003321 |
| TCONS_00006502 | mRNA | downstream | 17115 | 12744644 ~ 12768626 (+) | True | XLOC_003321 |
| TCONS_00006503 | mRNA | downstream | 84377 | 12811906 ~ 12859263 (+) | True | XLOC_003323 |
| TCONS_00006504 | mRNA | downstream | 132731 | 12860260 ~ 12875188 (+) | False | XLOC_003324 |
| TCONS_00006493 | other | upstream | 8175 | 12711700 ~ 12711996 (+) | True | XLOC_003318 |
| TCONS_00006492 | other | upstream | 25908 | 12693967 ~ 12694263 (+) | True | XLOC_003317 |
| TCONS_00006491 | other | upstream | 34572 | 12685304 ~ 12685599 (+) | True | XLOC_003316 |
| TCONS_00006490 | other | upstream | 40143 | 12679732 ~ 12680028 (+) | True | XLOC_003315 |
| TCONS_00006489 | other | upstream | 96320 | 12623555 ~ 12623851 (+) | True | XLOC_003314 |
| TCONS_00006509 | other | downstream | 202628 | 12930157 ~ 12946210 (+) | True | XLOC_003325 |
| TCONS_00006540 | other | downstream | 1090040 | 13817569 ~ 13817684 (+) | True | XLOC_003341 |
| TCONS_00006541 | other | downstream | 1137317 | 13864846 ~ 13864964 (+) | True | XLOC_003342 |
| TCONS_00006553 | other | downstream | 1472367 | 14199896 ~ 14248440 (+) | True | XLOC_003347 |
| TCONS_00006565 | other | downstream | 1605912 | 14333441 ~ 14340783 (+) | False | XLOC_003351 |
