RNA id: XM_039808423.1


Basic Information

Item Value
RNA id XM_039808423.1
length 1575
RNA type mRNA
GC content 0.60
exon number 10
gene id LOC120563910
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5790297 ~ 5803234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTTGCCATGACACCGTGttttgtttacatgtagccgAGGGCTGGATGCGTAGCTCGGCTAGCTAACAGCTTTAACTTCTGTTTGTTACGTTAACTACGTTACTACCGTCATTTGCGAGCCTGCCAGCCTATTTCACGATGCTGGAGGAGCACATCATCCGGCTCCGAGAGGAGCTGGACCGAGAGCGGGAGGAGAGGAGCTACTTCCAGCTGGAGAGGGACAAGATCCAGGCATTCTGGGAAATCTCCAAGAGGAGCCTGGAGGAGACGCAGGCCGAGCTGAGGAACGGACATCGGGAGAGAGACGAGGCCGAGGAGCGCCACCGGGTGGAGATCACTGTGTACAAGCAGAAGCTGAAGCACGTCCTGTCCGAACACCACGACAACATCTCGGAGCTGAAGATGGACGCCGTGGCGTCCACCTCGCTGATCCAGAACCAGCACACGGTGTCGGAGCTCGGCCTGCGCACAGAAGTGCACGGCCTGCAGGCCGACTTCAGACACAACCAGGCCCACAACCAGAACTGCATCAAGGACCTCAAGCTGAAACACCAGGTGGAGTTAATGGAGCTGGCCAACGACTACGACCGAAGAATCAGAGAAATTGAGGTGAAGTATCGCAAGAAGATGCAGTCGATGATCGACGCGGAGGGCAAGAGGCGGCGTGCCGAGGTCAACGAGATCGAGGACCGGATGAAAGGCCGCGTGGTGGCGCTGATGGAGGAGCACGACCGAGCGCTGCGTGGCGCCGAGGAGTACTACTCAGCTGTTCAGACCAAACTGCTGGCCGACCAGAAGCTGCTCAAGgaggAACTTGCGGAGGCGACCAAGCGCCAGGCGCGAGTGGACCGAGAGCTCTCAGCAGCCGAGCAGGAGAACAAGCGTCTGAGCGCGTCCCTGCAGGACGTCCAGCGGAAGCTGCCCGAGCTCCGCAAACAGCTGGACGACCACAACCGGGCCAAGGCCAAGATGGCGACGAGCCGAGCTCGAGTGAAGGTGGCCGAGAAGGAGCTGAGAGATCTGACGGTGGAGCacgagctgctgctgcaggctgcagagaAGGTCCAGCGGGAGCGGGACGAGCTGCTGAGGTTGCAGACCGAGGCCATCCTGGACGTGCAGCAGAAGAGCGGGCTGAaggagctgctgctggagagGAAGCTGGCGGCGCTGGCGGAGACCGTGGAGAAGAAGGAGGCGCAGCTCAGCGTCGCCCTGTCGGCCTCCAACCTCGACCAGACCGCCGGCGCCGGCGCCGCAAACAAACTCGAGGAAATATTGGCGTCTAAACGAGCGACCATCGACGCCTTGCAGAGCGACCTGGCTCGAGATTGTAAGGAGTACGACGGGCTGCTGCGGAGCTgccaggaggagctggaggccTCGGGGGGGCCGCTCACCCACTCCTCCTTCAGGCCCTCGGAGCACATCCTCCGGGGACGGACCTCTCTGGGACCGGCCTCCCAGCACTGAACACTGAACCCCTCCATGGgttacctacacacacacacacacacatatatatatatacatatacacacacatatacacacacacacacacacacatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2501 lncRNA upstream 10417 5776366 ~ 5779880 (+) False G1787
TU2489 lncRNA upstream 10823 5765974 ~ 5779474 (+) False G1787
TU2592 lncRNA downstream 77119 5880353 ~ 5958646 (+) True G1871
TU2540 lncRNA downstream 84068 5887302 ~ 5958266 (+) True G1820
TU2541 lncRNA downstream 84068 5887302 ~ 5944941 (+) False G1820
TU2595 lncRNA downstream 94471 5897705 ~ 5960101 (+) True G1873
XR_005640051.1 lncRNA downstream 116321 5919555 ~ 5921025 (+) True LOC120564002
XM_039809499.1 mRNA upstream 182496 5606454 ~ 5607801 (+) True LOC120564476
XM_039809476.1 mRNA upstream 199289 5589669 ~ 5591008 (+) True LOC120564466
XM_039809144.1 mRNA upstream 272189 5501032 ~ 5518108 (+) True ndufaf5
XM_039808012.1 mRNA upstream 321419 5387393 ~ 5468878 (+) False acaa1
XM_039807758.1 mRNA upstream 418527 5361351 ~ 5371770 (+) True btbd3a
XM_039808496.1 mRNA downstream 73313 5876547 ~ 5882423 (+) True snrpb2
XM_039808449.1 mRNA downstream 235977 6039211 ~ 6058589 (+) True prokr1a
XM_039808345.1 mRNA downstream 285618 6088852 ~ 6093726 (+) True LOC120563871
XM_039808352.1 mRNA downstream 286960 6090194 ~ 6093727 (+) False LOC120563871
XM_039808319.1 mRNA downstream 301911 6105145 ~ 6109440 (+) True LOC120563868
TU2438 other upstream 415390 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 462540 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 567553 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 751583 4977783 ~ 5038714 (+) False G1600
TU2539 other downstream 73374 5876608 ~ 5916374 (+) False snrpb2
XR_005641751.1 other downstream 582368 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 582368 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 582368 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 582368 6385602 ~ 6402040 (+) False LOC120573424

Expression Profile