RNA id: TCONS_00006501


Basic Information

Item Value
RNA id TCONS_00006501
length 851
lncRNA type retained_intron
GC content 0.43
exon number 4
gene id XLOC_003321
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12744575 ~ 12770546 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGTGAGATGCGCGAACTGGTTTTGCAAGTGACGTGTGTTGAGTGTAAAAGCCTGTTTTTCTGCTTTTTGGCTCTATATCCCTGGTCCATTCAGTGGCTACCCTACAGAAAAGTACGCCAAAATGGCCGATAAAGAAGTGTACGATGACGCCGTGGAGGAGAGGGTAATAAATGAGGAGTACAAGATCTGGAAGAAAAACACACCATTCCTGTATGACCTAGTCATGACACATGCGCTCGAGTGGCCAAGTTTAACAGTGCAGTGGCTTCCTGATGTCAACAGGCCTGAGGGGAAGGACTATGTGGTTCACCGGCTGGTGTTGGGCACACACACTTCAGACGAGCAAAACCATCTGGTCATCGCCAGTGTTCAGATCCCCAATGATGACGCTCAGTTCGACGCTTCCCACTATGACAGTGAGAAAGGAGCAGGTATGGTCAGGATGTTGAGAGGAAATCCAGATTCATTTGATCAATAAGAGTGAATCATTCCACAAAGATGTTACAGCTGCATGTGTTTTCGACAGCTATGTTTTGTTTATATctgtattaaatgtatataacCATATACTGGTGTTCTAGGAATAGTCAAatgaaaaattacaattctgttgtcatttactcatcttgAAAATGTGACTGATGTGCATGTATTTTTGTTTACTAACTATTTCAGAGTTTGGAGGGTTTGGATCAGTTAGTGGAAAGATTGAGATTGAGATTAAGATCAACCATGAAGGAGAAGTGAACAGAGCCAGATACATGCCACAAAACCCCTGCATCATCGCCACCAAGACCCCTACTTCTGATGTGCTGGTGTTTGACTACACCAAACACCCATCCAAACCA

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0006325 chromatin organization biological_process
GO:0031101 fin regeneration biological_process
GO:0006260 DNA replication biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-848 Acts upstream of or within fin regeneration and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in mesoderm. Orthologous to several human genes including RBBP7 (RB binding protein 7, chromatin remodeling factor).

Ensembl:

ensembl_id ENSDART00000136331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006494 lncRNA upstream 26233 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00008394 lncRNA upstream 221606 12522770 ~ 12523029 (+) True XLOC_003307
TCONS_00006480 lncRNA upstream 250458 12493872 ~ 12494177 (+) True XLOC_003304
TCONS_00008393 lncRNA upstream 277575 12466766 ~ 12467060 (+) True XLOC_003302
TCONS_00006458 lncRNA upstream 577845 12166486 ~ 12166790 (+) True XLOC_003282
TCONS_00008574 lncRNA downstream 29854 12782215 ~ 12785059 (+) True XLOC_003322
TCONS_00008395 lncRNA downstream 127366 12879727 ~ 12880871 (+) False XLOC_003325
TCONS_00008396 lncRNA downstream 136930 12889291 ~ 12889880 (+) False XLOC_003325
TCONS_00006518 lncRNA downstream 399558 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00006523 lncRNA downstream 435774 13188135 ~ 13189006 (+) True XLOC_003331
TCONS_00006495 mRNA upstream 16282 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006498 mRNA upstream 16984 12720308 ~ 12727651 (+) True XLOC_003320
TCONS_00006497 mRNA upstream 17106 12720171 ~ 12727529 (+) False XLOC_003320
TCONS_00006496 mRNA upstream 17405 12719988 ~ 12727230 (+) False XLOC_003320
TCONS_00006460 mRNA upstream 560092 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006503 mRNA downstream 59545 12811906 ~ 12859263 (+) True XLOC_003323
TCONS_00006504 mRNA downstream 107899 12860260 ~ 12875188 (+) False XLOC_003324
TCONS_00006505 mRNA downstream 108077 12860438 ~ 12873165 (+) True XLOC_003324
TCONS_00006507 mRNA downstream 127274 12879635 ~ 12955738 (+) False XLOC_003325
TCONS_00006506 mRNA downstream 127274 12879635 ~ 12955738 (+) False XLOC_003325
TCONS_00006493 other upstream 32639 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006492 other upstream 50372 12693967 ~ 12694263 (+) True XLOC_003317
TCONS_00006491 other upstream 59036 12685304 ~ 12685599 (+) True XLOC_003316
TCONS_00006490 other upstream 64607 12679732 ~ 12680028 (+) True XLOC_003315
TCONS_00006489 other upstream 120784 12623555 ~ 12623851 (+) True XLOC_003314
TCONS_00006509 other downstream 177796 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006540 other downstream 1065208 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006541 other downstream 1112485 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006553 other downstream 1447535 14199896 ~ 14248440 (+) True XLOC_003347
TCONS_00006565 other downstream 1581080 14333441 ~ 14340783 (+) False XLOC_003351

Expression Profile

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