RNA id: TCONS_00065947


Basic Information

Item Value
RNA id TCONS_00065947
length 950
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_033711
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25033924 ~ 25040976 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAAACCTCAGGCCGTATAGATTTATTTCAACAGTATCCCAGTGAAAGCCTGCTGCTCTTCCACCTCTTCTTGCTTCATGTAGGAGATGTTGTGAAAGTATTCTCTATTACAGACGCTTGGATTAACATCTCCCCTGAGTTCACAAGACCATGACGATCGGCAGGAGCTTCAAAAAGAACCGGGTCCCTCGTACTCCTGCTTTCCTGGACAAGACTAATGGATTCTATGGACGCTTGGACGAGATGTTTAGAGACGATGTACGGATGGAAGGAGAGAGCAAAGAAGAGCAGCCAAGCAGCCAAGACAATGGGCCAGCTCCAGGCTGGATAGAAGAGGAGGACCATGTGGTTGATTTTAACCAGGGTATGATGGATGATGACGATGGGACCACTTTACTGAAGAGGAAGCCCAGCAGACTAAGCCGCCGATGGAGCAGGATGAGCTCCAGGAAGGCAAAGTACGGGAAGTTTTCCTCAGAGAAAGAACTAGGTAATGAAACCAGTACATCTGTAGATCTGAAGCCAGATGAGGCACTTCCATCCCAAACCCTAGAAAACAACAGAGAACCAGAACCAACGATGGGGCATTTCTCCGCGAAAGAGCATGCAGATGACCAGATTCTGATCAAAGGGAAGAAGGAGGGAGAAGTGGAAGACATGAAAACTGAAGGAAAGCTGAATGAGGAGACAATGGAAGTTGTGAAGAGGAACACTCTCAAGAATTACCGCAAGGCAATGGACAGAGCTTTTCGTCGAGGATGGGAGACTTTTGTTGCCAATCTGTATAGTGTGACTCTGACACCCATATCATCAACTTCTTCATCTGCACCATCAGACAAAACCCAACTGAACAAGAATCGTGTTTTGGCAGAATTCAGATAACGGTCAAACTCTCTCAGCTGCACTTTTTCCATTTCAATCACTGAATaacttgatttattaatttaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-9 Is expressed in intestinal bulb primordium; liver; notochord; otic vesicle; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000163957

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065945 lncRNA upstream 17832 25015176 ~ 25018356 (+) True XLOC_033710
TCONS_00065938 lncRNA upstream 67091 24964909 ~ 24969097 (+) True XLOC_033708
TCONS_00068828 lncRNA upstream 220470 24814851 ~ 24815718 (+) False XLOC_033705
TCONS_00068573 lncRNA upstream 320388 24715477 ~ 24715800 (+) True XLOC_033703
TCONS_00068827 lncRNA upstream 341441 24690727 ~ 24694747 (+) True XLOC_033702
TCONS_00068829 lncRNA downstream 1634 25042052 ~ 25047309 (+) False XLOC_033712
TCONS_00068830 lncRNA downstream 1646 25042064 ~ 25047309 (+) False XLOC_033712
TCONS_00068831 lncRNA downstream 1650 25042068 ~ 25047309 (+) False XLOC_033712
TCONS_00068835 lncRNA downstream 1652 25042070 ~ 25047309 (+) False XLOC_033712
TCONS_00068834 lncRNA downstream 1652 25042070 ~ 25047309 (+) False XLOC_033712
TCONS_00065943 mRNA upstream 6927 25015151 ~ 25029261 (+) False XLOC_033710
TCONS_00065944 mRNA upstream 11818 25015153 ~ 25024370 (+) False XLOC_033710
TCONS_00065939 mRNA upstream 24591 25000060 ~ 25011597 (+) False XLOC_033709
TCONS_00065961 mRNA downstream 9127 25049545 ~ 25058145 (+) False XLOC_033714
TCONS_00065962 mRNA downstream 9159 25049577 ~ 25077141 (+) False XLOC_033714
TCONS_00065963 mRNA downstream 12913 25053331 ~ 25058145 (+) False XLOC_033714
TCONS_00065964 mRNA downstream 19427 25059845 ~ 25100304 (+) True XLOC_033714
TCONS_00065965 mRNA downstream 63547 25103965 ~ 25104398 (+) False XLOC_033715
TCONS_00065919 other upstream 505519 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065907 other upstream 772449 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065899 other upstream 919044 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 959367 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065894 other upstream 961213 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065954 other downstream 2592 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065956 other downstream 4764 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065957 other downstream 4992 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065958 other downstream 5430 25045848 ~ 25045974 (+) False XLOC_033712
TCONS_00065959 other downstream 5721 25046139 ~ 25046208 (+) False XLOC_033712

Expression Profile

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