RNA id: TCONS_00006561


Basic Information

Item Value
RNA id TCONS_00006561
length 1729
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_003350
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14312260 ~ 14319087 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTCATGTGAGTTTCCGTTGTGCGTCTGATGGTtagtcaaagtttttttttttttaataaataggcCATATATTAAATAGTTATGAATTCAATAAGTTTTAAATACCTGCGTCGTGAATGTGTATATTCTCGGTATTGCTGTGTCCCGTTTTGTAAAATTTCATCAAGGTTTAATTCTGTGATCAGTTTCCATAAATTACCTTTGGACAGAGCAACACGAAAGATGTGGCTTCACAATATCCGGCGAAAGACTTTTGAAGTCAGCCCTCATGTAAGAGTTTGTAGCCGACACTTCACAAATGATGATTTTATTGAGCCGTCGTATCCTACAGCACGCAGACTGCTGAAGAAGGGTGCTGTACCCACATTGTTCAGGTGGAACAACGATTCCACTTCAGGCCAAAAGCGCTTTAGACTATGGGAGAAAAAAGCTTCCTCCTCCTCTGATCAGGAAGAAGAACTTGTGCCTATGGACTTCCAGCATGAGGACCATAATTACTATTGCACATCTCGAGTCCAAAATGATGAGGTTGTGGATCCGACTGATGATCTCCGAAATGAAGTGGAGGTCCTGAAGAGAAAGGTTGCAGAGTTTTCTGTCAATCAGAGATTTTGTTTGGGGCGATTTGCAGCATCTGACGATGACATAAGGTTTTACACTAGATTTGCAACTTACAACCACTTGATGGCGTTCTGGAGAATCATTCAGCCTGCTTCCCACAACATGTTTCGCGTAACCAGAGCCAGGGCAGATACAACAAAGTGTGATGTTCAAGCAACAGACAAGGCatctgtTCAGTTCTTGCTGCCTATAGATGAGTTTTTCCTCTTCATGGTCCATCTCTCTGTTGGACTGACAAAGAGGGATCTAGCCCACAGATTCAATGTCCATCAGTCCACCGTGAGTCAAATCATTTCAACCTGGGCCAATTTTCTGTACACAATTCTTGGATCAGTGCACATTTGGATGTCCAAGGAGGCGGTCAAGGCTCAAATGCCAAAGGAATTCCAAGACTACCCAGACACACAAGTGATAATTGACTGTATAGAGCTTTGTTGCCGAATACAATCATCTGACCTGTTCCCAGATGAAGGGTACGATTGCACCTTCAAGGGGTTAATTGGCATGGCACCACATGGTGCAGTCACTTTTGTGTCATCTTTGTATGCAGGGTCGGTCAGTGACAATGAGGTTCTTAAGAAGTCTGGGATTGTGTTGTACCTGAAACCTGAAATGGCCATCATGGTTAACAAAGATTTTCTTGTAGATGACTCTATACTATGCACAGTTTACAGACCAGCTTATCCAGTCAAGAGAGAACTGATGGAGGCTGATGAGGATGTGGGAAAGATGGGTGACACTCAGTCCATTGCTCAACTGAGGGTCCACattgagcatctcatctgcagggtGAAGCAGCACAAGCTTCTTGATTCAGTCATGCCTTTTACCAGCACAAGGACCATCAACCGGCTATACATAGTAGCTTGCCTTTTTATAAACTACCAGGATGGTCCTTTGTTAAAAAGATGGACATGATTAAAGGCTAGATGGAACAATCACTGTTTTTTTGTACGATCAAGAATAGCATCAgtgtaaaggtaaaataaaatacatttgtacaacATTTTTGTAGAGATATAAATTTGTGCTTAGATGCCATttctgttaaagggatagttcatgcaaaaaaaaataaaaacttttgtgattttaaaatttaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3152 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000102518

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006546 lncRNA upstream 230083 14081540 ~ 14082177 (+) True XLOC_003344
TCONS_00006539 lncRNA upstream 663002 13642161 ~ 13649258 (+) True XLOC_003340
TCONS_00008575 lncRNA upstream 1117663 13193723 ~ 13194597 (+) False XLOC_003332
TCONS_00006523 lncRNA upstream 1123254 13188135 ~ 13189006 (+) True XLOC_003331
TCONS_00006518 lncRNA upstream 1159875 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00006567 lncRNA downstream 15156 14334243 ~ 14338679 (+) True XLOC_003351
TCONS_00008576 lncRNA downstream 24358 14343445 ~ 14346112 (+) False XLOC_003352
TCONS_00006570 lncRNA downstream 25492 14344579 ~ 14345138 (+) True XLOC_003352
TCONS_00006575 lncRNA downstream 543199 14862286 ~ 14863542 (+) False XLOC_003355
TCONS_00008577 lncRNA downstream 543329 14862416 ~ 14863275 (+) True XLOC_003355
TCONS_00006560 mRNA upstream 12007 14295011 ~ 14300253 (+) True XLOC_003349
TCONS_00006556 mRNA upstream 19234 14281100 ~ 14293026 (+) False XLOC_003348
TCONS_00006562 mRNA downstream 2026 14321113 ~ 14342507 (+) False XLOC_003351
TCONS_00006563 mRNA downstream 2068 14321155 ~ 14328326 (+) False XLOC_003351
TCONS_00006564 mRNA downstream 2107 14321194 ~ 14327105 (+) False XLOC_003351
TCONS_00006566 mRNA downstream 14354 14333441 ~ 14340783 (+) False XLOC_003351
TCONS_00006568 mRNA downstream 24358 14343445 ~ 14345429 (+) False XLOC_003352
TCONS_00006553 other upstream 63820 14199896 ~ 14248440 (+) True XLOC_003347
TCONS_00006541 other upstream 447296 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006540 other upstream 494576 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006509 other upstream 1366050 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006493 other upstream 1600264 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006565 other downstream 14354 14333441 ~ 14340783 (+) False XLOC_003351
TCONS_00006571 other downstream 112186 14431273 ~ 14639060 (+) False XLOC_003353
TCONS_00006572 other downstream 112278 14431365 ~ 14440826 (+) False XLOC_003353
TCONS_00006578 other downstream 698098 15017185 ~ 15018524 (+) False XLOC_003358
TCONS_00006591 other downstream 1567883 15886970 ~ 15902195 (+) False XLOC_003365

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_07954270_07957397.mRNA True 1519 mRNA 0.45 3 CI01000051 7954270 ~ 7957559 (+)