XLOC_003350 (si:ch211-262i1.5)


Basic Information

Item Value
gene id XLOC_003350
gene name si:ch211-262i1.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14312260 ~ 14319087 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006561
GTGTTCATGTGAGTTTCCGTTGTGCGTCTGATGGTtagtcaaagtttttttttttttaataaataggcCATATATTAAATAGTTATGAATTCAATAAGTTTTAAATACCTGCGTCGTGAATGTGTATATTCTCGGTATTGCTGTGTCCCGTTTTGTAAAATTTCATCAAGGTTTAATTCTGTGATCAGTTTCCATAAATTACCTTTGGACAGAGCAACACGAAAGATGTGGCTTCACAATATCCGGCGAAAGACTTTTGAAGTCAGCCCTCATGTAAGAGTTTGTAGCCGACACTTCACAAATGATGATTTTATTGAGCCGTCGTATCCTACAGCACGCAGACTGCTGAAGAAGGGTGCTGTACCCACATTGTTCAGGTGGAACAACGATTCCACTTCAGGCCAAAAGCGCTTTAGACTATGGGAGAAAAAAGCTTCCTCCTCCTCTGATCAGGAAGAAGAACTTGTGCCTATGGACTTCCAGCATGAGGACCATAATTACTATTGCACATCTCGAGTCCAAAATGATGAGGTTGTGGATCCGACTGATGATCTCCGAAATGAAGTGGAGGTCCTGAAGAGAAAGGTTGCAGAGTTTTCTGTCAATCAGAGATTTTGTTTGGGGCGATTTGCAGCATCTGACGATGACATAAGGTTTTACACTAGATTTGCAACTTACAACCACTTGATGGCGTTCTGGAGAATCATTCAGCCTGCTTCCCACAACATGTTTCGCGTAACCAGAGCCAGGGCAGATACAACAAAGTGTGATGTTCAAGCAACAGACAAGGCatctgtTCAGTTCTTGCTGCCTATAGATGAGTTTTTCCTCTTCATGGTCCATCTCTCTGTTGGACTGACAAAGAGGGATCTAGCCCACAGATTCAATGTCCATCAGTCCACCGTGAGTCAAATCATTTCAACCTGGGCCAATTTTCTGTACACAATTCTTGGATCAGTGCACATTTGGATGTCCAAGGAGGCGGTCAAGGCTCAAATGCCAAAGGAATTCCAAGACTACCCAGACACACAAGTGATAATTGACTGTATAGAGCTTTGTTGCCGAATACAATCATCTGACCTGTTCCCAGATGAAGGGTACGATTGCACCTTCAAGGGGTTAATTGGCATGGCACCACATGGTGCAGTCACTTTTGTGTCATCTTTGTATGCAGGGTCGGTCAGTGACAATGAGGTTCTTAAGAAGTCTGGGATTGTGTTGTACCTGAAACCTGAAATGGCCATCATGGTTAACAAAGATTTTCTTGTAGATGACTCTATACTATGCACAGTTTACAGACCAGCTTATCCAGTCAAGAGAGAACTGATGGAGGCTGATGAGGATGTGGGAAAGATGGGTGACACTCAGTCCATTGCTCAACTGAGGGTCCACattgagcatctcatctgcagggtGAAGCAGCACAAGCTTCTTGATTCAGTCATGCCTTTTACCAGCACAAGGACCATCAACCGGCTATACATAGTAGCTTGCCTTTTTATAAACTACCAGGATGGTCCTTTGTTAAAAAGATGGACATGATTAAAGGCTAGATGGAACAATCACTGTTTTTTTGTACGATCAAGAATAGCATCAgtgtaaaggtaaaataaaatacatttgtacaacATTTTTGTAGAGATATAAATTTGTGCTTAGATGCCATttctgttaaagggatagttcatgcaaaaaaaaataaaaacttttgtgattttaaaatttaaaa

Function

symbol description
si:ch211-262i1.5 Predicted to enable DNA binding activity and metal ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3152 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000070059

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006561 True 1729 mRNA 0.41 3 14312260 14319087

Neighbor

gene id symbol gene type direction distance location
XLOC_003349 si:ch211-262i1.4 coding upstream 12007 14295011 ~ 14300253 (+)
XLOC_003348 si:ch211-262i1.3 coding upstream 19234 14280598 ~ 14293026 (+)
XLOC_003347 palm1a coding upstream 44405 14199802 ~ 14267855 (+)
XLOC_003346 plppr3b coding upstream 150285 14147913 ~ 14161975 (+)
XLOC_003345 med16 coding upstream 168558 14104417 ~ 14143702 (+)
XLOC_003351 ptbp1b coding downstream 2026 14321113 ~ 14342507 (+)
XLOC_003352 si:ch211-262i1.6 coding downstream 24358 14343445 ~ 14346112 (+)
XLOC_003353 BX571942.1 coding downstream 112186 14431273 ~ 14640317 (+)
XLOC_003354 si:ch73-60h1.1 coding downstream 357149 14676236 ~ 14751380 (+)
XLOC_003355 CU019562.3 coding downstream 543199 14862286 ~ 14863542 (+)
XLOC_003318 CR450764.6 misc upstream 1600264 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 1617997 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 1626661 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 1632232 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1688409 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 1803699 16122786 ~ 16123082 (+)
XLOC_003344 CT956066.1 non-coding upstream 230083 14081540 ~ 14082177 (+)
XLOC_003342 AL928649.1 non-coding upstream 447296 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 non-coding upstream 494576 13817569 ~ 13817684 (+)
XLOC_003332 NA non-coding upstream 1117663 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 1159875 13151919 ~ 13152385 (+)
XLOC_003356 CU019562.2 non-coding downstream 583622 14902709 ~ 14904977 (+)
XLOC_003358 CR550302.2 non-coding downstream 698098 15017185 ~ 15018524 (+)
XLOC_003359 NA non-coding downstream 1020257 15339344 ~ 15341413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07954270_07957397 NA coding CI01000051 null 7954270 ~ 7957559 (+)