XLOC_003345 (med16)


Basic Information

Item Value
gene id XLOC_003345
gene name med16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14104417 ~ 14143702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006547
GGAGCTCCAGCCCAATAGGGGGTGGTAAGTATTAGATGAGTCTTTGAATCCGGAAAGAGTCGACGAATACAGGCGCTCAATGATGTGATGTGCAGCTTCAAAGTGCTATTTGCTGAATTAGAATAGATTTGAAACGCCAgaacaatttatattattaacaaattaatttatgtTCGGACTTATTAGCAGGAGCATGTAGTTTTGAGTCTGCCATACCCATCattttcttctgtttctgtacAGTAGCGGTGTTTGCTTTTGTTGTCTCCCGTAGTGATTGTGAACACATTCAAAGGTGTTCATTTGGGGCATCTGTGCTGTAAACAGTAAGTTTCCTTCATTATATGATGGATATCGCATATGTTTGCGAGTGGGAGAAGAGACCCAAGAGCAACCACTGTCCTTCAATCCCTCTGGTGTGCGCCTGGTCATGTAGAAACCTCATCGCTTTCACCACTGACCTGAAGAATGAGGAGGATGACAAAGGTCTGGACAATGCCTTTATTACCAATATTACCACTCCTGTTGatcTCAGTCATATGATACACATCATTGACACTGATCACCCCTGGGATGTGTACTCCATCAATTCTGGTCACAATGAGATAATTTCCTGCCTAGAATGGGATCAGTCTGGTTCGAGGTTGTTGTCTGCTGATGGTGATGGTCAGATCAAGTGTTGGGGCATGACAGAGCACCTGGTGAACAGCTGGGAGTGCGCACAGAGCAGCTCAGTGGACGGAGACCCTATTGTAGCACTTTCATGGTTACACAATGGAGTCAAACTCGCCCTGCATGTTGAAAAGTCTGGCTCAACGAACTTTGGAGAGAAATTTTCCCGGGTTAAGTTTTCCCCGTCTCTGACGTTATTTGGTGGAAAACCCATGGAGGGATGGTTAGCAGTGACAGTGAGCGGCCTGGTGACTGTGTCCTTATTAAAGCCAAATGGGACTTTGTTGACAGCCAGTGAGAGCCTGTGCAGACTGAGGGGTCGTGTGGCCCTAGCAGACATCGCCTTTACTGGTGGTGGGAATATAGTCGTGGCGGCCACAGATGGCAGCAGCTCCTCTCCGGTGCAGTTCtataaagtgtgtgtgagtgtggtgAATGAGAAGTGCCGCATCGACACTGAGCTCCTTCCCTCACTGTTCATGCGCTGCACCACCGACCCATTGCGGAGAGACAAGTACCCTGCTGTCACACACCTTAAATTCCTCACGCGAGAGAACTCAGAACAGgTCCTGCTCTGTGCATCTAGTCAGATGGGCAGCATTGTTGAGTGCTGGTCCTTGCGCAAGGAGGGTCTCCCTGTTAACAATATCTTTCAACACCGATCACCAGTGGTAGGTGAAAAGCAGCCAATGACTCTAAAGTGGCGAATCCTCTCAACGACCAATGATCTGGACAGAGTGTCTGCTGTCGCTCTGCCTAAACTTCCAATCTCCATCTCAAACACTGATCTCAAAGTTGCCTCTGATACTAAGTTCTTCCCAGGCCTCGGTCTTGCCTTGGCATTCCATGATGGCAGTATCCAGATTCTCCATCGCCTTTCCCTCCAAACAGTGGGAATGTTCTATGGTTCCTCTGGTTCCTCCCAGCGCGTTGGAGAAGAACCTGCCATTAAACGCCAGAGAGCCGGAGGCCCAATGCTGCACTTCAAAGCCCTTCAGTTCTCTTGGACATCTTTAGCTCTGGTGGGCATAGACAATCATGGCAAGTTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAGGTTTTGTCCACCCGTATAGTAGCAGTGAAGGCATCTCTGTGTAAGCTGTCATCTGCCACTGCAGCAAGAGCATGTGACTTCCATGCAAAACTGCTCCTCATTGCCATCAGCTCCACGCTGAAGTCGTTACTGAGACCTCATGTGCTTAACACCCCGGATAAAAGTCCTGGAGACAGACTGTCTGAGATCTGTGCCAAAAACACTGACACTGACATTGATAAGGTGATGATCAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCACCCCTCCAGTCCCTTCAGCAGCTTATTCAGTGGGTCGGAGACTTTGTTCTGTACCTGCTGGCCAACCTTCCCAACCAGGGCTCCATTGTGCGTCCAGGGTTTGGGTTCTTGCGTGACGGTGCGTCTCTGGGCATGCTAAGAGAGATGCTGGTGATGATCCGTATTTGGGGCCTTCTGAAACCAGGCTGTTTGCCCATTTACACAGCCACATCTGACAACCAGGACAGCATGTTTCTGCTCTTCCGCCTGCTCACCAAACTCTGGCTCTGCTCTCGAGATGAGAGTCACCCGCAGGACCCTGATGAGACATTGATTGATGAGTGCTGTCTGTTGCCCAGTCAGCTCCTTGTACCCAGCATGGACTGGCTGCCCATCAATGATGGTGTCATTACTAAGATCCAGGGCAAACACCAGCTCAGATTGCAGTTCGGCAAACCGTACACCCTGCCTGGGGTCAACCCCAATGCACAAGTGGAGATTTTCAGAAGTCCAGCGTCACAGAGAGTGGATCACCTGCGATGTTTACATCTGGGCATCTCTCCAACCGAGGATAGCAAAGCTTGCACAAGGTGCGGCTGTGTCACCATGTTAAGAtctccaaataaaacaaatgccacGAGACAATGGGAGCAGCGTTGGATCAAGAACTGTCTGTGTGGAGGTCTCTGGAGAAGAATCCCCTCCACATTAAGCTAAAGACCACACCATTTGGAAATGTTAAAGCAGCATGGGTCTCCTATTATAAACCAATGtatagaaatgcacaataaaaCAGGCcaccatatttttaaaatatgtcctACAGGACTTACAGTATTTCCCAGTCAATTTGTCTGAGAGTGaatgctgtatatttttttccagttGTAAATATGAATTGTGTGAATTGTTTGTAATTTTGTAGTATGTGATataattttttgtaataaataaaatgacaaatgtcATTATAAAA
>TCONS_00006548
ACGAATACAGGCGCTCAATGATGTGATGTGCAGCTTCAAAGTGCTATTTGCTGAATTAGAATAGATTTGAAACGCCAgaacaatttatattattaacaaattaatttatgtTCGGACTTATTAGCAGGAGCATGTAGTTTTGAGTCTGCCATACCCATCattttcttctgtttctgtacAGTAGCGGTGTTTGCTTTTGTTGTCTCCCGTAGTGATTGTGAACACATTCAAAGGTGTTCATTTGGGGCATCTGTGCTGTAAACAGTAAGTTTCCTTCATTATATGATGGATATCGCATATGTTTGCGAGTGGGAGAAGAGACCCAAGAGCAACCACTGTCCTTCAATCCCTCTGGTGTGCGCCTGGTCATGTAGAAACCTCATCGCTTTCACCACTGACCTGAAGAATGAGGAGGATGACAAAGatcTCAGTCATATGATACACATCATTGACACTGATCACCCCTGGGATGTGTACTCCATCAATTCTGGTCACAATGAGATAATTTCCTGCCTAGAATGGGATCAGTCTGGTTCGAGGTTGTTGTCTGCTGATGGTGATGGTCAGATCAAGTGTTGGGGCATGACAGAGCACCTGGTGAACAGCTGGGAGTGCGCACAGAGCAGCTCAGTGGACGGAGACCCTATTGTAGCACTTTCATGGTTACACAATGGAGTCAAACTCGCCCTGCATGTTGAAAAGTCTGGCTCAACGAACTTTGGAGAGAAATTTTCCCGGGTTAAGTTTTCCCCGTCTCTGACGTTATTTGGTGGAAAACCCATGGAGGGATGGTTAGCAGTGACAGTGAGCGGCCTGGTGACTGTGTCCTTATTAAAGCCAAATGGGACTTTGTTGACAGCCAGTGAGAGCCTGTGCAGACTGAGGGGTCGTGTGGCCCTAGCAGACATCGCCTTTACTGGTGGTGGGAATATAGTCGTGGCGGCCACAGATGGCAGCAGCTCCTCTCCGGTGCAGTTCtataaagtgtgtgtgagtgtggtgAATGAGAAGTGCCGCATCGACACTGAGCTCCTTCCCTCACTGTTCATGCGCTGCACCACCGACCCATTGCGGAGAGACAAGTACCCTGCTGTCACACACCTTAAATTCCTCACGCGAGAGAACTCAGAACAGgTCCTGCTCTGTGCATCTAGTCAGATGGGCAGCATTGTTGAGTGCTGGTCCTTGCGCAAGGAGGGTCTCCCTGTTAACAATATCTTTCAACACCGATCACCAGTGGTAGGTGAAAAGCAGCCAATGACTCTAAAGTGGCGAATCCTCTCAACGACCAATGATCTGGACAGAGTGTCTGCTGTCGCTCTGCCTAAACTTCCAATCTCCATCTCAAACACTGATCTCAAAGTTGCCTCTGATACTAAGTTCTTCCCAGGCCTCGGTCTTGCCTTGGCATTCCATGATGGCAGTATCCAGATTCTCCATCGCCTTTCCCTCCAAACAGTGGGAATGTTCTATGGTTCCTCTGGTTCCTCCCAGCGCGTTGGAGAAGAACCTGCCATTAAACGCCAGAGAGCCGGAGGCCCAATGCTGCACTTCAAAGCCCTTCAGTTCTCTTGGACATCTTTAGCTCTGGTGGGCATAGACAATCATGGCAAGTTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAGGTTTTGTCCACCCGTATAGTAGCAGTGAAGGCATCTCTGTGTAAGCTGTCATCTGCCACTGCAGCAAGAGCATGTGACTTCCATGCAAAACTGCTCCTCATTGCCATCAGCTCCACGCTGAAGTCGTTACTGAGACCTCATGTGCTTAACACCCCGGATAAAAGTCCTGGAGACAGACTGTCTGAGATCTGTGCCAAAAACACTGACACTGACATTGATAAGGTGATGATCAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCACCCCTCCAGTCCCTTCAGCAGCTTATTCAGTGGGTCGGAGACTTTGTTCTGTACCTGCTGGCCAACCTTCCCAACCAGGGCTCCATTGTGCGTCCAGGGTTTGGGTTCTTGCGTGACGGTGCGTCTCTGGGCATGCTAAGAGAGATGCTGGTGATGATCCGTATTTGGGGCCTTCTGAAACCAGGCTGTTTGCCCATTTACACAGCCACATCTGACAACCAGGACAGCATGTTTCTGCTCTTCCGCCTGCTCACCAAACTCTGGCTCTGCTCTCGAGATGAGAGTCACCCGCAGGACCCTGATGAGACATTGATTGATGAGTGCTGTCTGTTGCCCAGTCAGCTCCTTGTACCCAGCATGGACTGGCTGCCCATCAATGATGGTGTCATTACTAAGATCCAGGGCAAACACCAGCTCAGATTGCAGTTCGGCAAACCGTACACCCTGCCTGGGGTCAACCCCAATGCACAAGTGGAGATTTTCAGAAGTCCAGCGTCACAGAGAGTGGATCACCTGCGATGTTTACATCTGGGCATCTCTCCAACCGAGGATAGCAAAGCTTGCACAAGGTGCGGCTGTGTCACCATGTTAAGAtctccaaataaaacaaatgccacGAGACAATGGGAGCAGCGTTGGATCAAGAACTGTCTGTGTGGAGGTCTCTGGAGAAGAATCCCCTCCACATTAAGCTAAAGACCACACCATTTGGAAATGTTAAAGCAGCATGGGTCTCCTATTATAAACCAATGtatagaaatgcacaataaaaCAGGCcaccatatttttaaaatatgtcctACAGGACTTACAGTATTTCCCAGTCAATTTGTCTGAGAGTGaatgctgtatatttttttccagttGTAAATATGAATTGTGTGAATTGTTTGTAATTTTGTAGTATGTGATataattttttgtaataaataaaatgacaaatgtcATTATAAAA

Function

symbol description
med16 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-090306-4 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

Ensembl:

ensembl_id ENSDARG00000040779

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006547 False 3147 mRNA 0.48 14 14104417 14143702
TCONS_00006548 True 3043 mRNA 0.48 14 14104479 14143702

Neighbor

gene id symbol gene type direction distance location
XLOC_003344 CT956066.1 coding upstream 22240 14081540 ~ 14082177 (+)
XLOC_003343 grin3bb coding upstream 39433 14004236 ~ 14064984 (+)
XLOC_003342 AL928649.1 coding upstream 239453 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 coding upstream 286733 13817569 ~ 13817684 (+)
XLOC_003340 wdr18 coding upstream 314966 13642157 ~ 13789451 (+)
XLOC_003346 plppr3b coding downstream 4211 14147913 ~ 14161975 (+)
XLOC_003347 palm1a coding downstream 56100 14199802 ~ 14267855 (+)
XLOC_003348 si:ch211-262i1.3 coding downstream 136896 14280598 ~ 14293026 (+)
XLOC_003349 si:ch211-262i1.4 coding downstream 151309 14295011 ~ 14300253 (+)
XLOC_003350 si:ch211-262i1.5 coding downstream 168558 14312260 ~ 14319087 (+)
XLOC_003318 CR450764.6 misc upstream 1392421 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 1410154 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 1418818 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 1424389 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 1480566 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 1979084 16122786 ~ 16123082 (+)
XLOC_003332 NA non-coding upstream 909820 13193723 ~ 13194597 (+)
XLOC_003329 CR847923.1 non-coding upstream 952032 13151919 ~ 13152385 (+)
XLOC_003353 BX571942.1 non-coding downstream 287571 14431273 ~ 14640317 (+)
XLOC_003355 CU019562.3 non-coding downstream 718584 14862286 ~ 14863542 (+)
XLOC_003356 CU019562.2 non-coding downstream 759007 14902709 ~ 14904977 (+)
XLOC_003358 CR550302.2 non-coding downstream 873483 15017185 ~ 15018524 (+)
XLOC_003359 NA non-coding downstream 1195642 15339344 ~ 15341413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07855788_07865402 MED16 coding CI01000051 null 7855240 ~ 7865625 (+)
bowfin (Amia calva) AMCG00006144 med16,LOC106613614 coding CM030142.1 CM030142.1 16694712 ~ 16703925 (-)