RNA id: TCONS_00006547


Basic Information

Item Value
RNA id TCONS_00006547
length 3147
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_003345
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14104417 ~ 14143702 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGCTCCAGCCCAATAGGGGGTGGTAAGTATTAGATGAGTCTTTGAATCCGGAAAGAGTCGACGAATACAGGCGCTCAATGATGTGATGTGCAGCTTCAAAGTGCTATTTGCTGAATTAGAATAGATTTGAAACGCCAgaacaatttatattattaacaaattaatttatgtTCGGACTTATTAGCAGGAGCATGTAGTTTTGAGTCTGCCATACCCATCattttcttctgtttctgtacAGTAGCGGTGTTTGCTTTTGTTGTCTCCCGTAGTGATTGTGAACACATTCAAAGGTGTTCATTTGGGGCATCTGTGCTGTAAACAGTAAGTTTCCTTCATTATATGATGGATATCGCATATGTTTGCGAGTGGGAGAAGAGACCCAAGAGCAACCACTGTCCTTCAATCCCTCTGGTGTGCGCCTGGTCATGTAGAAACCTCATCGCTTTCACCACTGACCTGAAGAATGAGGAGGATGACAAAGGTCTGGACAATGCCTTTATTACCAATATTACCACTCCTGTTGatcTCAGTCATATGATACACATCATTGACACTGATCACCCCTGGGATGTGTACTCCATCAATTCTGGTCACAATGAGATAATTTCCTGCCTAGAATGGGATCAGTCTGGTTCGAGGTTGTTGTCTGCTGATGGTGATGGTCAGATCAAGTGTTGGGGCATGACAGAGCACCTGGTGAACAGCTGGGAGTGCGCACAGAGCAGCTCAGTGGACGGAGACCCTATTGTAGCACTTTCATGGTTACACAATGGAGTCAAACTCGCCCTGCATGTTGAAAAGTCTGGCTCAACGAACTTTGGAGAGAAATTTTCCCGGGTTAAGTTTTCCCCGTCTCTGACGTTATTTGGTGGAAAACCCATGGAGGGATGGTTAGCAGTGACAGTGAGCGGCCTGGTGACTGTGTCCTTATTAAAGCCAAATGGGACTTTGTTGACAGCCAGTGAGAGCCTGTGCAGACTGAGGGGTCGTGTGGCCCTAGCAGACATCGCCTTTACTGGTGGTGGGAATATAGTCGTGGCGGCCACAGATGGCAGCAGCTCCTCTCCGGTGCAGTTCtataaagtgtgtgtgagtgtggtgAATGAGAAGTGCCGCATCGACACTGAGCTCCTTCCCTCACTGTTCATGCGCTGCACCACCGACCCATTGCGGAGAGACAAGTACCCTGCTGTCACACACCTTAAATTCCTCACGCGAGAGAACTCAGAACAGgTCCTGCTCTGTGCATCTAGTCAGATGGGCAGCATTGTTGAGTGCTGGTCCTTGCGCAAGGAGGGTCTCCCTGTTAACAATATCTTTCAACACCGATCACCAGTGGTAGGTGAAAAGCAGCCAATGACTCTAAAGTGGCGAATCCTCTCAACGACCAATGATCTGGACAGAGTGTCTGCTGTCGCTCTGCCTAAACTTCCAATCTCCATCTCAAACACTGATCTCAAAGTTGCCTCTGATACTAAGTTCTTCCCAGGCCTCGGTCTTGCCTTGGCATTCCATGATGGCAGTATCCAGATTCTCCATCGCCTTTCCCTCCAAACAGTGGGAATGTTCTATGGTTCCTCTGGTTCCTCCCAGCGCGTTGGAGAAGAACCTGCCATTAAACGCCAGAGAGCCGGAGGCCCAATGCTGCACTTCAAAGCCCTTCAGTTCTCTTGGACATCTTTAGCTCTGGTGGGCATAGACAATCATGGCAAGTTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAGGTTTTGTCCACCCGTATAGTAGCAGTGAAGGCATCTCTGTGTAAGCTGTCATCTGCCACTGCAGCAAGAGCATGTGACTTCCATGCAAAACTGCTCCTCATTGCCATCAGCTCCACGCTGAAGTCGTTACTGAGACCTCATGTGCTTAACACCCCGGATAAAAGTCCTGGAGACAGACTGTCTGAGATCTGTGCCAAAAACACTGACACTGACATTGATAAGGTGATGATCAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCACCCCTCCAGTCCCTTCAGCAGCTTATTCAGTGGGTCGGAGACTTTGTTCTGTACCTGCTGGCCAACCTTCCCAACCAGGGCTCCATTGTGCGTCCAGGGTTTGGGTTCTTGCGTGACGGTGCGTCTCTGGGCATGCTAAGAGAGATGCTGGTGATGATCCGTATTTGGGGCCTTCTGAAACCAGGCTGTTTGCCCATTTACACAGCCACATCTGACAACCAGGACAGCATGTTTCTGCTCTTCCGCCTGCTCACCAAACTCTGGCTCTGCTCTCGAGATGAGAGTCACCCGCAGGACCCTGATGAGACATTGATTGATGAGTGCTGTCTGTTGCCCAGTCAGCTCCTTGTACCCAGCATGGACTGGCTGCCCATCAATGATGGTGTCATTACTAAGATCCAGGGCAAACACCAGCTCAGATTGCAGTTCGGCAAACCGTACACCCTGCCTGGGGTCAACCCCAATGCACAAGTGGAGATTTTCAGAAGTCCAGCGTCACAGAGAGTGGATCACCTGCGATGTTTACATCTGGGCATCTCTCCAACCGAGGATAGCAAAGCTTGCACAAGGTGCGGCTGTGTCACCATGTTAAGAtctccaaataaaacaaatgccacGAGACAATGGGAGCAGCGTTGGATCAAGAACTGTCTGTGTGGAGGTCTCTGGAGAAGAATCCCCTCCACATTAAGCTAAAGACCACACCATTTGGAAATGTTAAAGCAGCATGGGTCTCCTATTATAAACCAATGtatagaaatgcacaataaaaCAGGCcaccatatttttaaaatatgtcctACAGGACTTACAGTATTTCCCAGTCAATTTGTCTGAGAGTGaatgctgtatatttttttccagttGTAAATATGAATTGTGTGAATTGTTTGTAATTTTGTAGTATGTGATataattttttgtaataaataaaatgacaaatgtcATTATAAAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-090306-4 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

Ensembl:

ensembl_id ENSDART00000059752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006546 lncRNA upstream 22240 14081540 ~ 14082177 (+) True XLOC_003344
TCONS_00006539 lncRNA upstream 455159 13642161 ~ 13649258 (+) True XLOC_003340
TCONS_00008575 lncRNA upstream 909820 13193723 ~ 13194597 (+) False XLOC_003332
TCONS_00006523 lncRNA upstream 915411 13188135 ~ 13189006 (+) True XLOC_003331
TCONS_00006518 lncRNA upstream 952032 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00006567 lncRNA downstream 190541 14334243 ~ 14338679 (+) True XLOC_003351
TCONS_00008576 lncRNA downstream 199743 14343445 ~ 14346112 (+) False XLOC_003352
TCONS_00006570 lncRNA downstream 200877 14344579 ~ 14345138 (+) True XLOC_003352
TCONS_00006575 lncRNA downstream 718584 14862286 ~ 14863542 (+) False XLOC_003355
TCONS_00008577 lncRNA downstream 718714 14862416 ~ 14863275 (+) True XLOC_003355
TCONS_00006542 mRNA upstream 39433 14004236 ~ 14064984 (+) False XLOC_003343
TCONS_00006544 mRNA upstream 39486 14049131 ~ 14064931 (+) False XLOC_003343
TCONS_00006545 mRNA upstream 41884 14057605 ~ 14062533 (+) True XLOC_003343
TCONS_00006543 mRNA upstream 48568 14004242 ~ 14055849 (+) False XLOC_003343
TCONS_00006538 mRNA upstream 314966 13642157 ~ 13789451 (+) False XLOC_003340
TCONS_00006549 mRNA downstream 4211 14147913 ~ 14161975 (+) False XLOC_003346
TCONS_00006550 mRNA downstream 4284 14147986 ~ 14161838 (+) True XLOC_003346
TCONS_00006551 mRNA downstream 56100 14199802 ~ 14267855 (+) False XLOC_003347
TCONS_00006552 mRNA downstream 56184 14199886 ~ 14267150 (+) False XLOC_003347
TCONS_00006554 mRNA downstream 136896 14280598 ~ 14291962 (+) False XLOC_003348
TCONS_00006541 other upstream 239453 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006540 other upstream 286733 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006509 other upstream 1158207 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006493 other upstream 1392421 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006492 other upstream 1410154 12693967 ~ 12694263 (+) True XLOC_003317
TCONS_00006553 other downstream 56194 14199896 ~ 14248440 (+) True XLOC_003347
TCONS_00006565 other downstream 189739 14333441 ~ 14340783 (+) False XLOC_003351
TCONS_00006571 other downstream 287571 14431273 ~ 14639060 (+) False XLOC_003353
TCONS_00006572 other downstream 287663 14431365 ~ 14440826 (+) False XLOC_003353
TCONS_00006578 other downstream 873483 15017185 ~ 15018524 (+) False XLOC_003358

Expression Profile

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