RNA id: TCONS_00006551


Basic Information

Item Value
RNA id TCONS_00006551
length 1827
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_003347
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14199802 ~ 14267855 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGGAGGGACGCACGCAGCAGCAGCTCCTGGTTTCACAGCTCTCACACAGGGAGAAGACACTGGGCTGACACTAATGCTGCTGCGCCtctgataaaacaaacaaacagccgGGGAAATAACCTGAAATTTGAGGGGGAAACAGCATTGAGACACTATGGAGATGTCAGAGTCAGTCTCACAGCAGGAGCGGCTCCAGGCTATTGCAGAAAAGAGGAAAAGGCAGACAGAAATTGAGAATAAGAAAAGACAACTAGAGGATGACCGACGGCAGCTTCAGCACCTTAAGTCAAAGGCACTTCGGGAAAGATGGCTGCTGGATGGTGCGCCCTCTGCAGGACAGGAGGAAGACGAGACAACTAAACAGCTGCGGGAACATGAGGCCAAAACCAGAGGTCTTGAGGAGACCATTGTCAGCCTGGAGAGAGAGTTGGAGGAGCTAGAGACGGGTGTGTCTGCAACATCCACCAAAGAAAACCTTTCAGATGCACTTCAGGAAATCAACACCAAGACAGTAGAAAAAATGgTGGTGACAGAATCTGTTAAAGTGGTGCATGAAGTGCGCAGTGTGGATGGCACAGTAACCAATGGTGTTCACCAGCTGAGCTCTTCAGAGGTTGATGAGCTCCTCCACAAAGCTGATGAGGTGACCATGGGCGAGAGTAGCAAGACAACGCCACGACTGGAGCGAGGGCAAGCCGAGAAGGAGGAGAAACATGAGAAAGATGTAACCCCAGCTGAAGCTAGCTCTACCCCCATCATGGAAATCACGGGCGTAGAAGCGAAACCCGCAGCCCCGCAGACGGAAGTGAGCGGAGCCAGTGCGGAGAACCCAGTTACAATGGTTTTCATGGGTTACCAGAGCGTAGAGGATGAGGATGAAACAAAGAAGGTTTTGGGGATGGAGAGCACGACTGTGAAGGCTGAGGTGGTGCTCATTGAGGATGGAGAAGGCAAAAATGCTGGCAGTGACACCAAGCAGGAGCAGGCGCCCCCTAATGGCAGCCCAGCAGAGGCAGATAAGGCTGAAGAGGCAGCAAGAGAGTCTGAGCAGCCAGAAGGGGACAATGCTGAGGTCAAGAGCAAGGAGAAACAACCATGCAAGTGCTGCACCATCATGTGAGCCCAAACACACCCTCCCAAACACGGACTTTACTGATGAAATGCAACAACATGCAAAGAGAACAATGTCAAGGCAGAGAATAAACATTCAGTATCTTTTGATAAGCTGTTATTTCTTTAATTGATTTTTacctgttttatattttatatattactttaTCTTTCCCCCATGATACTCTCTAacctcatttcatttttattttgaaataattattattttgttttattttttgtgaatgaAAAGAATGATGTCATATAGAAAAGTCTGAAGATTAAACCAAACTCAACCGATCAGTGTCCGTTCGCTTTAAATAGCGTTTCCTTTCATTGACTTTATTTGACTTCCCTTTTTGCGAAGCAAATGTTGCATGCACTACAAAATTTTTTCACTCTCACATATAAAAAGCTCAGTTTATTAATCAAGTAAGTTGTGAGATGCATTTAATTCattatcattttgttttttaaagtaggAATAAAACCTGTGGTATTGATGCACCTTTTCTTAGTATTGAcagtattgttttaaaatgactaAGCATTAGCTGAGTTTTTTAAAGGAATGTTCCAGTTTTATTTAAAAGTTCTCAGTTACTACAGATAAAAAGGACAATGAGTTTTTACCCATCCCCCAGTTTGTATTTGCATTGAAATATTAATTTGAATGTGATTTTTGAATGTGATTAAAACAGATTATCAACTCTAA

Function

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-409 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; basal plate midbrain region; myotome; nervous system; and solid lens vesicle. Orthologous to human PALM (paralemmin).

Ensembl:

ensembl_id ENSDART00000102520

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006546 lncRNA upstream 117625 14081540 ~ 14082177 (+) True XLOC_003344
TCONS_00006539 lncRNA upstream 550544 13642161 ~ 13649258 (+) True XLOC_003340
TCONS_00008575 lncRNA upstream 1005205 13193723 ~ 13194597 (+) False XLOC_003332
TCONS_00006523 lncRNA upstream 1010796 13188135 ~ 13189006 (+) True XLOC_003331
TCONS_00006518 lncRNA upstream 1047417 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00006567 lncRNA downstream 66388 14334243 ~ 14338679 (+) True XLOC_003351
TCONS_00008576 lncRNA downstream 75590 14343445 ~ 14346112 (+) False XLOC_003352
TCONS_00006570 lncRNA downstream 76724 14344579 ~ 14345138 (+) True XLOC_003352
TCONS_00006575 lncRNA downstream 594431 14862286 ~ 14863542 (+) False XLOC_003355
TCONS_00008577 lncRNA downstream 594561 14862416 ~ 14863275 (+) True XLOC_003355
TCONS_00006549 mRNA upstream 37827 14147913 ~ 14161975 (+) False XLOC_003346
TCONS_00006550 mRNA upstream 37964 14147986 ~ 14161838 (+) True XLOC_003346
TCONS_00006547 mRNA upstream 56100 14104417 ~ 14143702 (+) False XLOC_003345
TCONS_00006548 mRNA upstream 56100 14104479 ~ 14143702 (+) True XLOC_003345
TCONS_00006544 mRNA upstream 134871 14049131 ~ 14064931 (+) False XLOC_003343
TCONS_00006554 mRNA downstream 12743 14280598 ~ 14291962 (+) False XLOC_003348
TCONS_00006556 mRNA downstream 13245 14281100 ~ 14293026 (+) False XLOC_003348
TCONS_00006555 mRNA downstream 13245 14281100 ~ 14293026 (+) False XLOC_003348
TCONS_00006557 mRNA downstream 17011 14284866 ~ 14288276 (+) False XLOC_003348
TCONS_00006558 mRNA downstream 18305 14286160 ~ 14287856 (+) False XLOC_003348
TCONS_00006541 other upstream 334838 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006540 other upstream 382118 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006509 other upstream 1253592 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006493 other upstream 1487806 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006492 other upstream 1505539 12693967 ~ 12694263 (+) True XLOC_003317
TCONS_00006565 other downstream 65586 14333441 ~ 14340783 (+) False XLOC_003351
TCONS_00006571 other downstream 163418 14431273 ~ 14639060 (+) False XLOC_003353
TCONS_00006572 other downstream 163510 14431365 ~ 14440826 (+) False XLOC_003353
TCONS_00006578 other downstream 749330 15017185 ~ 15018524 (+) False XLOC_003358
TCONS_00006591 other downstream 1619115 15886970 ~ 15902195 (+) False XLOC_003365

Expression Profile

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