XLOC_003354 (si:ch73-60h1.1)


Basic Information

Item Value
gene id XLOC_003354
gene name si:ch73-60h1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14676236 ~ 14751380 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006574
gtgtgtgtgtgagacagataACCTCTCTGTCCCCGCCCCTTAGGCTACCAGCACAAACATCAGTGTGATATTTACCTGTAACGACGTTTCCCTCATCTTAACGCTTTTTACAGTAATCATTGGGTTTTTGAGAAGCATCAAATAAGacggtatatatttttttcttccagcGGAGACAAATGCAAGGATCATTCTGTCGCTTGGCATCGGGAAACGCAGGATTATGATGTTTCCTTAATTTTATGTCATGGGGAGGTTTGACGTGCGATGTGCGATGTGCGAGGGCCTTTAACATCTAAAGACCCATGGTCAAGATTATTTCCGAAAACCGCGTACAAATCGTAATATAGCATATTGATGACGTAGAAaagataaatacatttttctGGGTTTAGAAAATATTCTGGGATTTGTGAGTAGCTACGCGCACGAATACATACATGTAAACCTGGATATTTTAGATCAGGAAAAGATTTGAGGACTAAAACAAAACCGTATCGTTTAAACTGACacccagatgttaaaaataataCGGTTTCCTGGCATCCCTGATCAAAGGGATTTGTAGGCTATTGGAACTGTCATCCGAGGGTCCATCATGCCCACCTCTCGATCCGACGCGCGCCCAGTGGAATATTGGGTCGATGGCTCGCGCCGAGATGCGACGGTGGAGGATTTCTATAACATGGGCCCAGAATTAGGCAGGGGTGCCACATCTGTTGTTCTTCGTTGTGAAGAGAAGCAGACTGAGAAACCTTACGCTGTGAAGGTCTTAAAGAAAACTATTGACAAGAAAATTGTGAGGACAGAGATTGGAGTTCTGCTGCGTCTGTCTCATCCAAATATTATTCGTTTGAAGGAAATTTTTGAGACAGAAACAGAGATTTTTCTCATACTAGAACTGGTAACGGGTGGAGAGCTTTTTGACAGAATTGTGGAGAGGGGCTACTATAGCGAAAGAGATGCAGCTCATGTTATCAAACAAATCCTGGAGGCTGTGGCGTACTTGCATGAGAATGGAGTTGTTCACAGAGACCTCAAACCAGAAAATCTTCTCTATGCTGATTTGTCAATAGATGCACCACTTAAGATAGCTGACTTTGGCCTTTCCAAAATAATTGATGAGCAAGTGACAATGAAGACTGTATGTGGAACTCCCGGCTACTGTGCTCCTGAAATTCTCAGAGGAAATGCTTATGGTCCTGAGGTTGACATGTGGTCTGTGGGAGTCATCCTTTATATTTTGCTATGTGGGTTTGAACCATTTTTTGATCAAAGGGGGGACCAATATATGTACAGCCGCATTCTGAACTGTGATTATGAGTTTGTCTCCCCCTGGTGGGATGAAGTCTCTCTCAATGCAAAGGACCTGGTTAATAAGCTCATAGTCTTAGATCCTCATAAACGTCTCACAGTGAAGCAAGCTCTTGAGCATCCATGGGTTCTTGGAAAAGCAGCACGATTCTCCCACATGGACACAACACAGAGAAAACTACAGGAATTTAATGCAAGGCGCAAATTAAAGGCTGCTATGAAAGCTGTAGTTGCTACAAGCCGCATGCATGAGGGTTCACGACGACGGACTGATAGCTGCGAGATGCCTAACACAGATAAGACCTCATGCCAGAGCAGCATACAGAAAGAAAACACCACAAATTCTTCAAGAGAGCCTATTTCCATGAAAGAAGGATCTGAGCAAGTTGCAGATGGGGCCCTGGGGCCCTCGAGTTCTACCCCTCAAACAACTCCTAAATCTAAACCTTTTACCCAGTCTGGGCCAGTACCTACTCGTCCACCCCTGATAGCAGAAGGACACAGGCAGACCTCTGTCATACCAAAAGCTCCTGTGGTAAGGCCGAGGGAACCCAAAAAGAGCTTCTCAGTGGAACCCGGAGGAAAACATGAGGTTTCATGAGTTCATGAAGTTTTAACACCATACCACTCTGTCCTAATTACTTCATTAATGTTTTTATCATGAGTGTGAAAGTAGGCAGCAATGCAGCAGAATGATCTAAAGATTTGGATTTTTACTAAAGATGCATGCCTTATACAAGGACAAAGAAGAAAATGAAAGACAATATATTCTGCTTCTTCCATTTTTGCCATGTAATATTTTGATACTGAACTGGCACGTAATATGTTTTTTAAGCTTGTGAAGGGATGTGGCTTTAATAACAACTTTAGGTTAGCAGCAACACACATATTTGTTATTTTCTTAGCACAAGTATTGTTGAGATCATCTATCGGTAATCTTGTGGTAGTATATTTGTCTAGGAATTATTACTTAAAGACCCTAAAATTTCTACTTCAGGGTGTATTCACACTAGGCACAGCTGCCTTGAACCGATTGCCACCCCCCTT

Function

symbol description
si:ch73-60h1.1 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-152 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation.

Ensembl:

ensembl_id ENSDARG00000078504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006574 True 2361 mRNA 0.43 11 14676236 14751380

Neighbor

gene id symbol gene type direction distance location
XLOC_003353 BX571942.1 coding upstream 35919 14431273 ~ 14640317 (+)
XLOC_003352 si:ch211-262i1.6 coding upstream 330124 14343445 ~ 14346112 (+)
XLOC_003351 ptbp1b coding upstream 333729 14321113 ~ 14342507 (+)
XLOC_003350 si:ch211-262i1.5 coding upstream 357149 14312260 ~ 14319087 (+)
XLOC_003349 si:ch211-262i1.4 coding upstream 375983 14295011 ~ 14300253 (+)
XLOC_003355 CU019562.3 coding downstream 110906 14862286 ~ 14863542 (+)
XLOC_003356 CU019562.2 coding downstream 151329 14902709 ~ 14904977 (+)
XLOC_003357 CR550302.3 coding downstream 186524 14937904 ~ 14970911 (+)
XLOC_003358 CR550302.2 coding downstream 265805 15017185 ~ 15018524 (+)
XLOC_003359 NA coding downstream 587964 15339344 ~ 15341413 (+)
XLOC_003318 CR450764.6 misc upstream 1964240 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 1981973 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 1990637 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 1996208 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 2052385 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 1371406 16122786 ~ 16123082 (+)
XLOC_003344 CT956066.1 non-coding upstream 594059 14081540 ~ 14082177 (+)
XLOC_003342 AL928649.1 non-coding upstream 811272 13864846 ~ 13864964 (+)
XLOC_003341 CR555295.2 non-coding upstream 858552 13817569 ~ 13817684 (+)
XLOC_003332 NA non-coding upstream 1481639 13193723 ~ 13194597 (+)
XLOC_003362 FP016142.6 non-coding downstream 1024692 15776072 ~ 15779251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000207_00061447_00097369 CAMK4 coding CI01000207 null 61169 ~ 98605 (+)
bowfin (Amia calva) AMCG00006109 LOC104962492 coding CM030142.1 CM030142.1 16190630 ~ 16208678 (-)