XLOC_003362 (FP016142.6)


Basic Information

Item Value
gene id XLOC_003362
gene name FP016142.6
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15776072 ~ 15779251 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006583
GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGTTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTACAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGTCTTCTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTCTTTTTCGGATAAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGGACCGCCCTGGACCAACTGGACAATCAA
>TCONS_00006584
GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGACACAGAGCCAGAAGATATTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGAAGATGATGTTGCCACTCTTCAGACCAACCTAAATGTAAGGTGCCTGTCTGTGGTTCTGGAAGAGCAAATCGTGCTGGAAAAGATCTTCCGACAGCTGTTGTTCTCCTCTTTGGTTTGATTAATTTCCTCATTATGAACTACCCCAAAGAACTGAAACACATCTTTGAAACTATTCAGAAAGTGTTTATTGGCCTTGATCCTCAGTGCTCAGCAAGAGTCCagtatttcaaaaacaaaatgcatttgtttgtaCACTGAAATTGTGTTACTCTTGGTGTTGTCACGAAActtaaattcagttttgattttacattttcaaattttaaaaacatcaatttcccACCAATTGATAGATTGGCTGTTGTGTTcaagtgctcaacataaatgactgtgattggctgagaagtTCACCATTTCACTGCTCTTCACTGATGTTCATGGAaccatgcaaacacacacacacacacacacacacacacacacacacacacaaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006583 False 373 lncRNA 0.45 4 15776072 15777220
TCONS_00006584 True 604 lncRNA 0.41 2 15776072 15779251

Neighbor

gene id symbol gene type direction distance location
XLOC_003361 gdf11 coding upstream 19687 15613218 ~ 15756385 (+)
XLOC_003360 cdk5rap1 coding upstream 188938 15480695 ~ 15587134 (+)
XLOC_003359 NA coding upstream 434659 15339344 ~ 15341413 (+)
XLOC_003358 CR550302.2 coding upstream 757548 15017185 ~ 15018524 (+)
XLOC_003357 CR550302.3 coding upstream 805161 14937904 ~ 14970911 (+)
XLOC_003363 FP016142.2 coding downstream 20132 15799383 ~ 15801396 (+)
XLOC_003364 FP003590.2 coding downstream 42182 15821433 ~ 15868456 (+)
XLOC_003365 pank4 coding downstream 99092 15878343 ~ 15915788 (+)
XLOC_003366 draxin coding downstream 151937 15931188 ~ 16013114 (+)
XLOC_003367 agtrap coding downstream 261266 16040517 ~ 16064291 (+)
XLOC_003318 CR450764.6 misc upstream 3064076 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 3081809 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 3090473 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 3096044 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 3152221 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 343535 16122786 ~ 16123082 (+)
XLOC_003356 CU019562.2 non-coding upstream 871095 14902709 ~ 14904977 (+)
XLOC_003355 CU019562.3 non-coding upstream 912530 14862286 ~ 14863542 (+)
XLOC_003353 BX571942.1 non-coding upstream 1135755 14431273 ~ 14640317 (+)
XLOC_003368 ctbs non-coding downstream 291187 16070438 ~ 16083608 (+)
XLOC_003374 NA non-coding downstream 1313827 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 non-coding downstream 1358597 17137848 ~ 17141887 (+)
XLOC_003376 CR631124.1 non-coding downstream 1549314 17328565 ~ 17328681 (+)

Expression


Co-expression Network