XLOC_003366 (draxin)


Basic Information

Item Value
gene id XLOC_003366
gene name draxin
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15931188 ~ 16013114 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006593
AGAGCCCAGACGTTTCTTCAGTGATCCAATTCTTCACTCGGCTCCTTCTCAGTGGATTAATAAACGGTGGCCCTGTGTTTGAAAATGGTGGCTCCTGGCTTGTGTCAACTCTTCATTCTACTTCTTATAACACTGTCTCACACTTTGCACAGCTCTGAAATCTCATCTGACAATTTCAAACAGAGTCTGACCCCCTCCACCACTACCTCCAAGGAACACCCTGAAACAGGACTTACCGGTGGCAGACAACAAAAGAGACACTGGTCAGGCAAAGAACGGGATAGTGCTGGGCTGTTTTCTCAAAGGCATATGGACAGACTGGAGGATGATGGGACAAGTATGGAGGGTCTGAGCCCCGTAAGGCTAGAGATGGGACCTGGGGACACTATGAAGGCAGAAGTTCACGGTGAGGTCAGGGCTTCTGCTCAAATGCGTCAAGGAAGTCATCCAGCAGAAGGAGAGTTAAATCGTAAAGGCAGACGACATAGTCACAGGCTTCTGGCTGAGCACAGAAAGCATGGAGGCAAAAAAGACAAAGGTCGAGGTAAAGGGGATCTCAGCGACCCTGAACCAGAATTAGACTCCTTGCTGAAGGACTTAAATGCATTTGAGGATGGTCTAAACACTTCTCCACCCAATTACAACAGTGTCCCTCTCAATGAAGTTCCCTCCCCTCTCTCCCCTATTTTGGTAACCACGGCAATCAAAGGGCATCCCCCAACACTTCCCCCAGCCTCCACCAAACCCCAGAAGTCAAGCCAAGGCAGGACTCAAGGTGAAGTGATGCCCACTCTGGACATGACCCTCTTTGACTGGACTGATTATGAGGATATGAAGCCTGCAGACAGTTGGCCATCAAACAAAAGAAAAGATAAACGTCGCAGCAAAAACAAGAGCAATGGAAACACAACAACTGAGGCTGGAATTGTTGAACCATGTGACCATCATCTTGACTGCCTTTCTGGTTCCTGTTGTGACCTCAGAGAATTTGAATGTAAACCTCACAACCGTGGCCTAAATAACAAGTGTTTTGATGACTGCATGTGTGAGGAGGgtcTCCGATGTTACGCCAAGTTCCACCGCAAGCGGAGAGTGACCCGAAGACGTGGCCGCTGTGTGGACCCTGAATCAGTCAACAGCAACCAAGGAGCTTTTATTACCGTCTGACTGTAACAAATGCAGTATAAAGACAGATGAGAGCCTATACCCTAATACCCCATTACCAGACATGCAAGACTTGCTCATCGAATGTGTTTACATGAACTACACAATTACTgctgagattttttatttaaattataagtaATTTATCCTTTGGAAACACTAAAAGACAAACTAAATTTACAAGTTATAGTTCAAAGAACCAGAATTAACAGTGTCATTAGATAAACTTAAGAAAGAGATAAAGAAATCCCAGAAGGCACAGGACGtcaaaacatgacatcagattgatgttgtaccccaacatcatgggacgttgcattttgtttggaaatgaaaatcaggttgacgtcagaatccAAAGTCAGGCCagcgtcaatgtccaacgtcatacagacgttgcattttggttactttccaacacaatctaaaacgataaaatatcaatgtctaatgatgttacagcttgacgttgtgtggatgatATCAATATGACATTGGACTTTGGTGATTGAATGTCAGTAATTGACATCAATATGGTGGTTTAAGATGTTGTCCCgactttggattttttttgtcactttccaacacaacctaaaaccaacaaaatatcaatgtcatttcacaACGtttttggacgtcaaaataacattgtcattaGATGCtgatgacctaaatctaacctgatattaatgttttaagatgttgtgtgtctgcttgggTGTTTTCCCTTCCTTGAAAACATTTCTGAAGTTTTGCTTTTTTTAGCTATTAGCTGTTTAGCtgttcatttaaattttatttataataatttggcACCCTTGCCCTTGAATATAAGTGTGATCAGCACATTACTAGACATCATATAACTATTTATCTAGGGAACAACTCACAAGTTCTCGTGatttatgcttgtttttttcCAATAATGGCATTTATTGAATAATGTATGTATAGTGTATTTTGCTAGATAGTcagctgaaaataaacatttactgtaaatacCTCCTCAAACTATCCAAGATGTTggtgatattttttcttcagtagaacagtAAAGATTTTTAGCTAAACATGTTGTCCTCTGGTATCCATTAAATGTAAGTCAGTTGATGTTGTTACTTTGTGTCACGATCGGTGAAGGGAAAAAGGAGCAAGGACCCAAGCGCAGAGTGAAGtaggatttattaattaaaaaataaaataaaaggcaaaaataaacaaccccgagggggaaaacactactacaacaaacaataaaacaaacaaacaaacaaacttgactgggcaggcacgaCAAGGCAGGGCTGGACACAGCAGGACAGGTAAACATCGACAACATATGacaacagatgaacataattaactaataatgggttaacaaggagggtgggactagacaatagacgggagagcgcatgacacagagagacaacacaagccatgcgctcacatgaCAAGAACATGCGGCCAATAAGAGAACTCatcaaccgcatgttcatgacaagacgagcacaacactgaagcacacaacaaaaagcacgtgaccacaatgtaaacatcgggccacgtgctttgacaaaagacgcaaacACACGATAGatgaacaccttaccgtgcgctcacacataagcaacgcgcatgcttcatctcagcaccaaccaaaactgaaaccaactagacggaggcgccgagaataaagcagcgcgctgctgacagaacaaacactagTACAGGAGCGCGTGCGTCTGACGGACGCAgtgcgtgcgcggccacatcaagcggcagcgcacacactctgcgtacacccttgacggcgcgcgcgcacacagagacagaaacaggaccggacatgggtagtgtcagagctctgctaccaaaacaagaatttacaaagaccagagtggcagaaccctgacactagcccccccccaaaagggacgccacctggcgtccctaaagggtacatccaacaaggtacaagacagacaagaaacactacaagacaacaaaacaggcaacatcagacacaagacagggaggtgaacaggcaagacgacatgaagggggggagggagggaagccaagccagacccaacaagacaaacaagggagggatgggagggcaagaccagggaagatcaggagggacagtccagggtggatttagtgggtcgggggccccggcagggagccagggtggagccggaggatcCATCCAGGGTGGAAGAgaggaacaccagggaggagcaggagggacgacccagggagagtctatcaggggagacaaggcaggaggtcggtggggagccggcagggctggaggcctgtggggagccggctgggctggaggcctgtggggagccggctgggctggaagCGGCTGGGCTGAAGCcagcagggctggagaccagaggggagccggcagggcaaggagccgggctgggactgGCAGGGCAAGATGTCTGGGTGGCggcggcagggcaagacgtctgggtggcggcggcagggcaagacgtctgggtggcggcggcagggcaagacgtctgggtggcgccggcagggcaaggggtCGAGCTgtggccggctgggcaagacgtctgggtggcgccggcagggcaagacgtctgggtgtcgccggcagggcaagacgtctgggtgtcgccggcagggcaagacgtctgggtggcgccggcagggcaagacgtctgggtgtcggcggcagggcaagacgtctgggtggcgccggcagggcaagacgtctgggtggcgccggcagggcaagacgtctgggtggcgccggcagggcaaggggccgggctgtggccggcagggcaagacgtctgggtggcgccggcaggtcAAGGAGCCAGGCTgtggccggctgggcaagacatctgggtggcgccggcagggcaagacgtctgggtgttGCCGggagggcaagacgtctgggtgtcGCCGggagggcaagacgtctgggtgtcgccggcagggcaagacgtctgggtgtcgccggcagggcaagacgtctgggtgtcaccggcagggcaagacgtctgggtgtcgccggcagggcaagacgtctgggtggcgccggcagggcaagacgtctgggtggcgccggcagggcaaggggtCGGGCTgtggccggctgggcaagacgtctgggtggcgccggcagggcaagacgtctgggtggcgccggcagggcaaggagccgggctgtggccggctgggcaagacgtctgggtggcgccggcagggcaagacgtctgggtggtgccggcagggcaaggaggcggactgggaccggcactgagctgcgctcaggggctggagccaacactggagggcgctcaggggctggagccgacactggagggcgctcaggggctggagccgacactggagggcgctcaggggctggagccgacactggagggcgctcaggggctggagccgacactggagggcgctcaggggctggagccgacactggagggcgctcaggggctggagccgacactggagggcgctctggggctggagctgaCACTGCAGCAGAGGTCTTGCTCTTTAACCTCCACTTTTGAGTGCGGGTCAGCCCTTGCGGGCTGGACATGTGTTGGGAGGTGGTGCTGGTGTAAGGGATCCTCTTCTCTTGAAGGATCACTCCCTCCTTTAGCTGCAGAGCAGAGGGCAACAGAGAGCTGGGATTGGGATGTTCGCCATGAGCAGCCTGATGAACCAAATGCTCCACAAACTGATGGTAAGATAGCCCTCCCAACTTCAGCATCTGCTGGATATTGAGGGGCTTGTCGAGGGCATAGTTGAGGAGCTTCACCAGGGCTTGATCGTTGAACCCCAGCCCCTCTGCTGTCACACAAAATTTGGCTGTGAAATTGCCCACATCCATGCCACATTGCCGCAGCGACTGCAAACTGAGGAGCTGCAGTATGCGCCTGGAGAAGGGGCTGTCTTCACTCCGCTGGGTCCTTATTTTGGCGAGTTCGTACTGTCACGATCGGTGAAGGGAAAAAGGAGCAAGGACCCAAGCGCAGAGTGAAGtaggatttattaattaaaaaataaaataaaaggcaaaaataaacaaccccagagggggaaaacactactacaacaaacaataaaacaaacaaacaaacaaacaaacaaacaaacaaacatgactgGACAGGCACGACAAGGCAGGGCTGGAAACAGCAGGACAGGTAAACATCGACAACATATGATGACGAActcgcacaggacagcagacataaggggtttataaactgtaggaaattaacaaaaaacagatgaacataattaactaataatgggttaacaaggagggtgggactagacaatagacgggagagcgcatgacacagagagacaacacaagccatgcactcacatgacaagaacatgcggccaatgagagaactcatcaaCCGCATGTTTATGACAAGacgagcacaacactgaagcacacgacaaaaagcacgtgaccacaatgtaaacatcgggccacgtgctttgacaaaagacgcaagcaCACGATAGATGAACACCTTACCGTATCTCAGcaccaaccaaaactgaaaccaactagacggaggcgccgagaataaagcagcgcgctgctgacagaacaaacacaaacactagtacaagagcgcgcgcgtctgatgGACGCAgtgcgtgcgcggccacatcaagcggcagcgtacactctgcgtacacccttgacggcgcgcgcgcacacagagacagaaacaggaccggacatgggtagtgtcagagttctgctaccaaaacaagaatttacaaagaccagagtggcagaaccctgacactttGAGGTACAAAAATACGCAAGcaaaatgtaattcattcattcatttttttttgtcggcttagtccctttattaatccggagttgcctcagcaggatgaaccgccaacttatcctgcacgcttttacacagcggatgcccttccagccacaacccatctctgggaaacatgcacactcttacactacggacaattttagcctacccaattcaccggtaccacatgtctttggactgtgggggaaaccggagtacccggaggaaacccacgcaatcgcaactgagccgaggttcgaactagtgaccttcttgcagtgaggcgacagcagagTCAGAGAGTATGCAAGTGTGGGGATTAATTATGTTTtgcatgcatgcatgttttttttttctctcaaagtaATGGCACCCACTGACCACCATTATATACCAGAGGACTACAGTTTCAGctaaatattgtttttactgttttactgaAGAAACCTAAACTTTGGGTTGCCTGAGGGTGAGAAATTGAACAGCTTATTTTAACTTTTAGGTGAAAATCTTTTACTTTACAGTAGTTTAAGCACAAAAGGAGTTCCATGACTTGATTCTTGACCCTGTTTAATGAACCTGACTCAACAGGATATCTCATATCTGTatccagatgaaaaaaatatgataAGCTTACTGATAGACCTATTATGCAAGTTGGTAAACGTTTTTGCATGTGAGAACAAAATGGCATATTTGATTAAAGTTTTTAAACACAAATGGCATCTTTAtacatatttcaaattaattgaacTTAAAAACTAATAATGAGCCTTGAAAAATGTGCATTATAGTTAAACATAAATCAATCCTTGCTTTAAGTCAacctacagtatacagtatatgtacagATATTGTTCATCTTCCCATGAAGGTTGAACAATTTTTAGACTTAAAATTTTGAATAGCTttaaaatcaacccaggctcattcggaAAAACTTACTGCTAGATACCTTTCTGGAGATCTCCAAATACgttccaggagctacgtttttttttttttttttgcagtttttgttttagcaaatccaccagaggctgctgtgcatGCTTTTTAGGATCTCAAATTTCCTTCTCCactgccatttgcgcctgctgttctagTGTGAATCCATTAAAGgcttgactgacccaccctccttcttccctaaacccaaccaatattgtttCCATAAGCACTGATTGGCCCGCCCAaccattccctaaacccaaccgacggttttaaaaagaaatccagaaaaagaaaagccctcgtctgacttccactatgttttcagattttcccacattctcaccctgttacatacttgtttattttatcatttggcttctgtttttgtcttacctgctttctggaatgaTTCTTCGctagactcgaaccccatcgtcatagtcaactcctctctgcatcttaagtccgcCAAAGTACTTGTCGAGCTAACTGGCAAAAcgggtaacagcgggaaagccatccgcACGAAGGTACACGGTCAGCTGGTGAGCACGAAAACCGGGTCATACTGcaccgtagcgttcattttaaagacgaaatgcagccatcatacttccggctacataatttgtgttctccaaaaacgtatatagggctacgttttcagaaaagccatccacacgcAGTCAGTGGAATTTTATGGAGGATCTGAGCAACACATTTACATCCAATTTATGCTTGGGCCCGTGGAATTACTTTATAGTACACAAGATACCCATTTTGTGTCATTTTGATGTACAAGGTGCATCCTTGCTATAGTTAGATGCATTGTTATAAAAGGATTATTCTAATTACAGTTTAGTAAATCTGGTCTTTTAAATTGTACTTCAATATCCTGACAGTGAGTAACTTAACTCTACAGTCTGCtcctataattaaaaaataagccaTTTTAAATCATAAACAAGTTGCCCAAACCTGCTGTTTAAATGTTTACAGGCTTTTTTCTTCTGATTTGTAATGTTGAATCACTGTCAATAACTTTAGCCACTCTTCTATTCTGAACTCTGTGGTTAATTTGTGTGACTTATTTGtaatatatactttatttattgttgtaCCAAACAGCTTTCTTCATTTAGATATCTTATTGTAGACTGGAAATGTTAACTTCTAATCGTCTGTGTGTCCTGACTGAAAGATAAGTGAGTGTTATCTATAGGTTAGAGGGATAGAGATGGACCAAGGAGATTAAGGAAAAGATGAATgagttgtcattttaaatcacTGAGCTTCTTTATGACTTTTGGCTTCATCTCTGTGTCCCATCGCTGTCTTGATTAAACTGTTTGATAGACTTAAGTTAGTGGGGCTAGAGACACTTTAGTCTTTGTAACATCTTTTTTgtcttaaagtatttttttttcttaaaatgtaagcTCCCCAATTGTCAATTATTTTTAACTGAAAATCCCTAAATAAACATCACTAAGAACA
>TCONS_00006594
CACTCGGCTCCTTCTCAGTGGATTAATAAACGGGGATCTCAGCGACCCTGAACCAGAATTAGACTCCTTGCTGAAGGACTTAAATGCATTTGAGGATGGTCTAAACACTTCTCCACCCAATTACAACAGTGTCCCTCTCAATGAAGTTCCCTCCCCTCTCTCCCCTATTTTGGTAACCACGGCAATCAAAGGGCATCCCCCAACACTTCCCCCAGCCTCCACCAAACCCCAGAAGTCAAGCCAAGGCAGGACTCAAGGTGAAGTGATGCCCACTCTGGACATGACCCTCTTTGACTGGACTGATTATGAGGATATGAAGCCTGCAGACAGTTGGCCATCAAACAAAAGAAAAGATAAACGTCGCAGCAAAAACAAGAGCAATGGAAACACAACAACTGAGGCTGGAATTGTTGAACCATGTGACCATCATCTTGACTGCCTTTCTGGTTCCTGTTGTGACCTCAGAGAATTTGAATGTAAACCTCACAACCGTGGCCTAAATAACAAGTGTTTTGATGACTGCATGTGTGAGGAGGgtcTCCGATGTTACGCCAAGTTCCACCGCAAGCGGAGAGTGACCCGAAGACGTGGCCGCTGTGTGGACCCTGAATCAGTCAACAGCAACCAAGGAGCTTTTATTACCGTCTGACTGTAACAAATGCAGTATAAAGACAGATGAGAGCCTATACCCTAATACCCCATTACCAGACATGCAAGACTTGCTCATCGAATGTGTTTACATGAACTACACAATTACTgctgagattttttatttaaattataagtaATTTATCCTTTGGAAACACTAAAAGACAAACTAAATTTACAAGTTATAGTTCAAAGAACCAGAATTAACAGTGTCATTA
>TCONS_00006595
GGTGGCCCTGTGTTTGAAAATGGTGGCTCCTGGCTTGTGTCAACTCTTCATTCTACTTCTTATAACACTGTCTCACACTTTGCACAGCTCTGAAATCTCATCTGACAATTTCAAACAGAGTCTGACCCCCTCCACCACTACCTCCAAGGAACACCCTGAAACAGGACTTACCGGTGGCAGACAACAAAAGAGACACTGGTCAGGCAAAGAACGGGATAGTGCTGGGCTGTTTTCTCAAAGGCATATGGACAGACTGGAGGATGATGGGACAAGTATGGAGGGTCTGAGCCCCGTAAGGCTAGAGATGGGACCTGGGGACACTATGAAGGCAGAAGTTCACGGTGAGGTCAGGGCTTCTGCTCAAATGCGTCAAGGAAGTCATCCAGCAGAAGGAGAGTTAAATCGTAAAGGCAGACGACATAGTCACAGGCTTCTGGCTGAGCACAGAAAGCATGGAGGCAAAAAAGACAAAGGTCGAGGTAAAGGGGATCTCAGCGACCCTGAACCAGAATTAGACTCCTTGCTGAAGGACTTAAATGCATTTGAGGATGGTCTAAACACTTCTCCACCCAATTACAACAGTGTCCCTCTCAATGAAGTTCCCTCCCCTCTCTCCCCTATTTTGGTAACCACGGCAATCAAAGGGCATCCCCCAACACTTCCCCCAGCCTCCACCAAACCCCAGGTACCCTGGCAAGTAGAAGCGACCTTGAATATAAAggtctgttgttctgttctgagTGTTTTGTTTTCTAAGATGCCGTCATTCCTCTCATATACACTTAGGA

Function

symbol description
draxin Predicted to be involved in negative regulation of canonical Wnt signaling pathway; negative regulation of neuron projection development; and nervous system development. Predicted to act upstream of or within negative regulation of axon extension and negative regulation of neuron apoptotic process. Predicted to be active in extracellular region.

GO:

id name namespace
GO:0021528 commissural neuron differentiation in spinal cord biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0007417 central nervous system development biological_process
GO:0030900 forebrain development biological_process
GO:0021516 dorsal spinal cord development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-20 Acts upstream of or within central nervous system development; negative regulation of canonical Wnt signaling pathway; and neuron differentiation. Predicted to be active in extracellular region. Is expressed in central nervous system; neuroectoderm; segmental plate; spinal cord neural tube; and trunk. Orthologous to human DRAXIN (dorsal inhibitory axon guidance protein).

Ensembl:

ensembl_id ENSDARG00000058256

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006593 False 8513 mRNA 0.48 7 15931188 16013114
TCONS_00006594 False 866 mRNA 0.44 6 15931222 16005985
TCONS_00006595 True 788 lncRNA 0.49 2 15972519 15975848

Neighbor

gene id symbol gene type direction distance location
XLOC_003365 pank4 coding upstream 15400 15878343 ~ 15915788 (+)
XLOC_003364 FP003590.2 coding upstream 62732 15821433 ~ 15868456 (+)
XLOC_003363 FP016142.2 coding upstream 129792 15799383 ~ 15801396 (+)
XLOC_003362 FP016142.6 coding upstream 151937 15776072 ~ 15779251 (+)
XLOC_003361 gdf11 coding upstream 174803 15613218 ~ 15756385 (+)
XLOC_003367 agtrap coding downstream 27403 16040517 ~ 16064291 (+)
XLOC_003368 ctbs coding downstream 57324 16070438 ~ 16083608 (+)
XLOC_003370 pimr204 coding downstream 124188 16137302 ~ 16141536 (+)
XLOC_003371 tada3l coding downstream 139202 16152316 ~ 16179190 (+)
XLOC_003372 slc25a26 coding downstream 203795 16216909 ~ 16324575 (+)
XLOC_003318 CR450764.6 misc upstream 3219192 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 3236925 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 3245589 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 3251160 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 3307337 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 109672 16122786 ~ 16123082 (+)
XLOC_003359 NA non-coding upstream 589775 15339344 ~ 15341413 (+)
XLOC_003358 CR550302.2 non-coding upstream 912664 15017185 ~ 15018524 (+)
XLOC_003356 CU019562.2 non-coding upstream 1026211 14902709 ~ 14904977 (+)
XLOC_003374 NA non-coding downstream 1079964 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 non-coding downstream 1124734 17137848 ~ 17141887 (+)
XLOC_003376 CR631124.1 non-coding downstream 1315451 17328565 ~ 17328681 (+)
XLOC_003377 BX571952.1 non-coding downstream 1427477 17440591 ~ 17513632 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G247438 NA non-coding CI01000058 null 383731 ~ 411690 (-)