G247438


Basic Information

Item Value
gene id G247438
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 383731 ~ 411690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU280836
TTGTGTCCTTAGTGAAGTTTATTTCTGGCATTTAAGTTAAAAATAACTGACAATTTGTGAAACTTGAGAAATATCAAGATCAAAACAAGATGACCGAAAATACTTTACAAACACTAAAGCATATATAGCCCCACTAACATAAACGTCTATTAAACAGTTAAATCAAGACAGTGATAGGACACAGAGGTGTGTCAGACCATAAAGAAGCTCAGTGATTTAAAATGAAAACCCATCAATCTCTCCCCTCTGTTCATCTCTATCCCTCTAACCCATATAGGTAACAATCACTCATTCAATCATTCATCTTTCTGTCAGGACACACAGTCGTTAGAGCACATATCCTGACCACGATAACATCTCTAAAGAAAGCTGTTTGGTACAGAAATAAATAAAGCATATATTACAAATAAACCAAACAAACCAATATCACTTAGAATACAAGAGAAGTAGTAGTTATTGATAGTATAACATATAGCAGTAGAAAAAGCCTTTCATTCAGACACAAATGAATCTGTACAAACTTAACAAGTAACTTTTGACAAGCAGCAGGGTTTGAACAAAATTGTGAAATTAAATTGGACACAGTCATGGATATTGAATTGTAATTTGAATGACAGCAAGAGGAACTGACTAAATTGTAATTCAAAGAAATTTGCTGCATTCACGCCATGTCGTAATTAGCATAAATAAGGCTCTGTTTGCTTTGGAATCGCTCTGGCAGTACTTTGATGTCATACACCAATTGGTCTGCACAGCGCCGCTTTAAGTCGAACACGCCTTAAATCTGCAGTGGTCAGGGGGTATAGAAGTGGTACAAGTCATAGCTCTCAGAAAATTACAGATTTACATATTGTAATTACAAGTTCTACAAGCACGTGAAGGCATGTGAATGCACCTTCAATACAGTGGTCCACAACGTGCATTAACGCCATGTCGTAATTACCTTATTTACGATATTTCAACTTGTAAAAAGCATTCATGTCCTCGTAATGCTTGTAATTACAACTTGCAAGCTGGGAATTTTATGAGAGTTCCTTCTTGTACCACTGTACCACTGCAGATTAATTTAGGCATTAATAGCATTGCCATAGACACGCATAATTCACACTCAGATGATGTGAACAGCTTCAAATAGAACGTCACATGTTGTCATCTCTAATTTAAGGTAATTACGACATGGCGTGAAAGCAGCAACAGCCCTGCAGAATTTAGATCCAACTCACCTGCTTGGAAGTTTCTAGAAATCCTGACGATCTTGATTAGCTGGATCAGGTGTGTTTAATTAGGGTTGGAGATGAACTCTGCAGGGCTGTGGCCCTCATGAACTGAGTTTGAGACCGTTGTGTAATGCCTGCTACAGACTATGCGATTTCGGCAATCCTATAAGATCATTACAAATCACACTGTACGACATGGATCTAATAAACTTGGGTATGACATGTATGTACACTGTACTATGATGAACTATTGAATCGTAGGATATGACACAAGTATAAAACCTCATCAGCATGCGCTAGTGGTAAAGAAATAGAGCAAGATGAATCACACTTTGGCAATTGTGGTTTTTATGTGTGCTGAAAAAAAGAGGAGGAAGCGAAAGAGGAGAATACGGACATGGTCATGGCTAAGGAAAAGAGGCCAACTTGACATGCCAATTATGAAAATGGAGCTTGAGGTAAGTAGTTTTAGACCGTGACAATAGCTGTCTTTGAACCTCTCTCACTGTACAATGTACGACCACTGTTTAGGAGCCAAGACCACAGAAATCGCCACAGATCTGGGACTGCCCAAAAATCGTACAATGTGTACCGTGCTTTAATAAGTGACAATAAACATGTAGGAAATTCAATGGTCCATTAGTTGACTTTTTAGTTGATTAACTTGATTAATTCCATGGTCCAATAAAGTAATGTCATTACATTTAATGAAATGACCAATTACAGACTAAATTTCAATAGGTGGCATTTCAAAATTGCATTATTAATATCTTCTAGTGTTTCTATAAATATGGGTGAAATTCTACTTCCTGTCTCAAATTCCAATTCTGTATCCTGATTGCTCAATTCCTCAGTTTAAATTCCAGAATTTAAAACTGAATGGTGCACAACCCTGCTGGGTTAGTACAGCATTTGTACATTTAAAAAACGAATAGTTCCGGCCCATGATGCTGATTAGCCGTGTTTTATTTATGATAAAGCATGGCTATGGCGCTTCAGTGAACAGATTGGTGTATCGCTGTGCAATCCTTAGCAACATAAACGATATCAATTAATCAATATACTGTCAAAACTGTTCCATGTAAGTTTTCTGTTTCAGGTATGATACTGTATGTTCACAGAGTTATACTTTTTAATACCATTTAGGCATGAGGCATTACATCTAGGAACACTTTCTTGCTGTTTACTGTCACTGTCATAGTCATTTTTCTGGCGGAAGGATGGAATTTGATGATTTTACTTCAAAAAAGTAACTTATTAACACATATATTTTCAGCTTAATATGTTTATTGTGTGGTAATCATTTTATAAAAGCAATAAGGTACTCAAGGTGTGCTGTATTGTAAATACAGTCACAAATAAAGGGGTTGCAGGCACTCTGCTTCATGTCGTGCCTAAGAGAGCCCTTCAGTTGTGACTGTATTCACAATACAGCACACCTTAGCTCGTACCTTATTGCTTACTTATACTGTGGGTTGAGTTAGAGCAAGTTTTGATGGATGTTTAACTTTGGCCCACATTCTTCAAGGCTCAGTCCATCATGGGGTATAAGGATGTGGTCTCTCGTCTCTCTGTTTCTTTATCTCTTTATATGTCAGACAGTAATGAAGGCTCCTTGGTTGCTGTTGGCTGATTCTGGCTCCACACAGCGGCCACGTCTTCGGGTTACCCGCCGCTTGCGGTGGAACTTGGCATAACAACGCAGACCCTCTTCACACATGCAGTCATCATAACACTTGTTGTTTAGACCATGGTTGTGAGGTTTGCACTCATGTTCTCTGAGGTCACAACAGGATCCAGGAAGGCAATCAAGATGATGGTCACATGGTTCAATGACATCAGAATCAAGCGTTGTGTTCCCATTGCTCTTGTTTTTACTGCGACGTTTATCTTTTCTTTTATTGGATGGCCAAGTGTCTGCAGGCTTCATATCCTCATAATCAGTCCAGTCAAAGAGCGTCATGTCCAGAGTGGGCATCACCTCCCCTTGAACCCTTCCACGACCTGACTTCTTCGTATTCAAGGACGCTTCTGCTCGCCAGGGTACCTGGGGTTTGGTGGAGGCTGGGGGCAGTGTTGGGGGATGCTCGTTGATTGCTGTGGTTACCAAAATGGGGGAGAGGTGGGAGGGAGCTTCAGTGAGTGGAGCATTGTCGTAATTGGGTGGGGAGGTGTAAAGAACATCCTCAAATGCATTCGTGTCCTTCAGCATGGAGCCTAATTCTGGTTCAGGGTCATAGAGATCCCCTTTAGCTCGGCCTTTGTCTCTTTTGCCTCCCTGTTTTCTGTGCTCAGCCAGATGCCCGTGGCCATGTCTCCTGCCTTTACGATTGAACTCTCCCTCTGGTGGATGATTTCCACGCCGCATATGAGCAGGGCCCCTGACTTCATCATGAACCTCCACCCTCATACTGTCCCCAGGCTCCATCTCCAGCCTTACAGGGCTCAGGCCCTCTAGACTTGTCCCATCATCCTCCGGTCGGTCCACAGGCCTTCGAGAGAGCAGTCCAGCATTATCCCTGTCTTTACGTGACCAGTGTTTTCTTCGCTGGTTGCCGCCCAGAAGTCCCATGTCAGGGTCTGACTTGGAGTCAGTGGTGGAGGTAGAAGACCTGGTCATACTCCGTTTGGCATTTTCAGATGGGATCTCAGAGCTGTGCGAGGTGTGGGACAGTGTGATAAGGAGCAGGGCAAAGAGACAACATAAGCCTGGAGCTGCCATCTTCAAATACAG
>TU280838
ACACAACAGACCTTCGTATTCAAGGACGCTTCTGCTCGCCAGGGTACCTGGGGTTTGGTGGAGGCTGGGGGCAGTGTTGGGGGATGCTCGTTGATTGCTGTGGTTACCAAAATGGGGGAGAGGTGGGAGGGAGCTTCAGTGAGTGGAGCATTGTCGTAATTGGGTGGGGAGGTGTAAAGAACATCCTCAAATGCATTCGTGTCCTTCAGCATGGAGCCTAATTCTGGTTCAGGGTCATAGAGATCCCCTTTAGCTCGGCCTTTGTCTCTTTTGCCTCCCTGTTTTCTGTGCTCAGCCAGATGCCCGTGGCCATGTCTCCTGCCTTTACGATTGAACTCTCCCTCTGGTGGATGATTTCCACGCCGCATATGAGCAGGGCCCCTGACTTCATCATGAACCTCCACCCTCATACTGTCCCCAGGCTCCATCTCCAGCCTTACAGGGCTCAGGCCCTCTAGACTTGTCCCATCATCCTCCGGTCGGTCCACAGGCCTTCGAGAGAGCAGTCCAGCATTATCCCTGTCTTTACGTGACCAGTGTTTTCTTCGCTGGTTGCCGCCCAGAAGTCCCATGTCAGGGTCTGACTTGGAGTCAGTGGTGGAGGTAGAAGACCTGGTCATACTCCGTTTGGCATTTTCAGATGGGATCTCAGAGCTGTGCGAGGTGTGGGACAGTGTGATAAGGAGCAGGGCAAAGAGACAACATAAGCCTGGAGCTGCCATCTTCAAATACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU280836 False 3951 lncRNA 0.41 6 383731 411690
TU280838 True 734 lncRNA 0.54 2 383731 395132

Neighbor

gene id symbol gene type direction distance location
CI01000058_00282795_00302233 RAP1B, RAP1A coding downstream 81498 281394 ~ 302233 (-)
CI01000058_00252333_00267027 RPN2 coding downstream 116704 252283 ~ 267027 (-)
CI01000058_00155300_00224503 CDK5RAP1 coding downstream 159228 155300 ~ 224503 (-)
CI01000058_00018179_00021093 NA coding downstream 362302 17824 ~ 21429 (-)
CI01000058_00424190_00424456 NA coding upstream 12452 424142 ~ 424963 (-)
CI01000058_00441219_00462553 NA coding upstream 29521 441211 ~ 462719 (-)
CI01000058_00482663_00504956 RPF1, SPATA1 coding upstream 70402 481748 ~ 505206 (-)
CI01000058_00570327_00573074 NA coding upstream 158583 570273 ~ 573074 (-)
CI01000058_00599524_00634109 APC2 coding upstream 187489 599179 ~ 634109 (-)
G247437 NA non-coding downstream 23372 360119 ~ 360359 (-)
G247428 NA non-coding downstream 52132 331303 ~ 331599 (-)
G247363 NA non-coding downstream 269369 68204 ~ 114362 (-)
G247156 NA non-coding downstream 333410 50022 ~ 50321 (-)
G247472 NA non-coding upstream 14812 426502 ~ 426770 (-)
G247474 NA non-coding upstream 22225 433915 ~ 434123 (-)
G247487 NA non-coding upstream 96964 508654 ~ 509085 (-)
G247492 NA non-coding upstream 101114 512804 ~ 513019 (-)
G247592 NA other upstream 234753 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 2446793 2858483 ~ 2861491 (-)
G250230 NA other upstream 3276953 3688643 ~ 3696711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003366 draxin coding NC_007122.7 CM002895.2 15931188 ~ 16013114 (+)