XLOC_003371 (tada3l)


Basic Information

Item Value
gene id XLOC_003371
gene name tada3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16152316 ~ 16179190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006604
ATTCGTTTTTTCTTCCTTATATGGCAAATTACACGACAGGTCAAATAAATTGTACGTTTATCAAACAGGGTGTAATCTATAAATATTAATGTTCCGAAATAAACATTAGCTCTTTTGTGGCTTTGAACAGttgattatttttttgaaaataaatacaatttatttccaTACAGACGCGCTTTTGTATCGAATGTACCATTCTATGAACTGCGGTGTTGCGTTGTGAATGTCAACTGACAGGAAGCGGTATTTGTCGAATGTCGAATAATAATTTAACTATACAATATTTTAAGAAAACGTGCAACGGCCAAATTGAAGCTCTTATGATatacattcatgtttttaaaatgtaatcaacGAGCTGTATCCCCCCTACTGGCATAATGGTCTAGTCAGTAATGGATGCCCCTTCATCGGAGATATAGATTTCTGTAAATGCAGAGATGAGTGAACTGAAGGATTGCCCCCCATTAAAGTACTATGACTTCAAACCTGTGGACCACGTGAAAGTGTGTCCACGCTACACTGCAGTGCTCAGCCGCTCAGAGGATGATGGCATTGGCATTGAAGAGCTCGACACGCTTCAGCTGGAGCTGGAAACACTCTTGTCCTCTGCGAGCCGACGTCTCCGAGCACTGGAGGAACAGAGACAGATTCTTACAGATTGGCAGGACAAGAAAGGGGACAAAAGGTTTTTGAAATTAGAGAAAGATCCGGATCTTGCAGCCTCTTCTCGACATTCCAAGCCCAAGAAACAGAAGCTTGATGTAAAAGGAAGTCATGGTCCGGGACCTGGACCTGGCAGACCAAAGTCTAAAAACATTCAGACCAAGGTGCAGGACTTTGAATTTGAAGTGGACCCCCAAGATATACCCCGTAATCCCAAAAATGATGCTCCCAACAGGTTCTGGGCCTCGGTGGAGCCTTACTGTGCTGACATCACAAATGAAGAAATCCGCGTTCTAGAAGAGCTGCTCAAAGCCCCTGATGATGAAGCCGAGTACTACAAGATCCCAACTCTTGGAAAACATTATTCTCAACGCTGGGCTCAAGAAGACCTGTTAGAAGAGCAAAGAGAAGGGGCACGAGCCAACGACAAGAAGAAAAGCATGATGGGTCCACTTTCTGAACTTGATGCTAAAGATGTAGATGCCCTTCTGAAGAAATCTGAGTCTCAGCATGAGCCTCCAGAGGACGGATGCCCCTTCGGTCCGCTCACTCAGCGACTTCTACAAGCTCTTGTTGAGGAGAACATCATATCTCCTATGGAGGATTCCCCCATTCCAGACATTCCAGGGAAGGATGATGGAGCTGGTACATCACCTCGTAGCCAGGGGAAAGCCTTCAGtGTACCTCACACACGCTCTCTGGAGGCTCGTATAAGAGAAGAGCTGGTGTCTCAGGGGCTGCTGGACTCTGATGAGAGGCAAGGGGTCGGAGGAGAGTCTGAAGATGAGGTGCTGGCCGAACTGCAGAAAAGACAAGCTGAACTTAAAGCACTGACCGCACACAACCGCTCACGCAAACTGGAGCTGCTCAAGTTGGCCCGGGAAGAGATGCGCAAGCAGGAGCTTCGTCAGCGGGTGCGAGTGGCGGATAATGAGGTTATGGAGGCCTTCCGTCGCATCATGGCAGCCAGACAAAAGAAACGCACtccaacaaaaaaagagaaagatcAGGCGTGGAAAGCTCTGAAGGAGAGAGAAAGTATCCTCAAACTTTTGGACGGATGAATACGAGTGGCAGCTATAATATGATTCATTATGCATTTTCTCTCCTGTGTTTGTTGGACACATCATACATAAAACTTTAGACGACTTGAAGAACAtgtaaatgaacagttaatatattGTTCTTATGTTTTGACTACTCACTATCTAATATAATACCTGACATGACTAGCTGAATAAAGGTGTTTGACACTACAAGTTTCAAGTGACACTTGACATTACTGATGCCAGAAGTATGGCAACTTGAGTTTActtgtttttcttttcctttatttcatTATGTTTTTGCCTTTCTGTACAGTTCCCACATGCAGCTGATTTCATACAATACAATTTGTTCACCTTCATACTGTTTTAAACTGGCACAATTTACTTTTTGTTTGTGGAACAAATAATAAATGAGGGAAAAATGGTAACCAGAATAAGAATGTCATAAACACTGaggtattttaaaataaaatagtatatatGTTGTGTTACACAGAAGAGGGAAATACTTATTGTAGGTTTGGAATGACGTGAGGATGATGAAATCGTGACAGGGTTATTTTTGGGTGACAACATGAGTGGCAACACCACaacatatttttgacatttttgttacAACCTGGCATAGACCAAGAAGAGAACGTGTTATTTCgagttttttatatattaaaaaaagaaataaatcttTGTATAAATGTAAGAGTTTGTAAAGTAATGCATATTTACCCGTTGGCTTTGTTAAATTCAGTCAtatcattttgacattttgtaaACTTTTCAACCATTTTATTGCTgttgcatgtttgtgtttttgaaaataaaacgAAGCTTTGATAAATT
>TCONS_00006605
ATATAGATTTCTGTAAATGCAGAGATGAGTGAACTGAAGGATTGCCCCCCATTAAAGTACTATGACTTCAAACCTGTGGACCACGTGAAAGTGTGTCCACGCTACACTGCAGTGCTCAGCCGCTCAGAGGATGATGGCATTGGCATTGAAGAGCTCGACACGCTTCAGCTGGAGCTGGAAACACTCTTGTCCTCTGCGAGCCGACGTCTCCGAGCACTGGAGGAACAGAGACAGATTCTTACAGATTGGCAGGACAAGAAAGGGGACAAAAGGTTTTTGAAATTAGAGAAAGATCCGGATCTTGCAGCCTCTTCTCGACATTCCAAGCCCAAGAAACAGAAGCTTGATGTAAAAGGAAGTCATGGTCCGGGACCTGGACCTGGCAGACCAAAGTCTAAAAACATTCAGACCAAGGTGCAGGACTTTGAATTTGAAGTGGACCCCCAAGATATACCCCGTAATCCCAAAAATGATGCTCCCAACAGGTTCTGGGCCTCGGTGGAGCCTTACTGTGCTGACATCACAAATGAAGAAATCCGCGTTCTAGAAGAGCTGCTCAAAGCCCCTGATGATGAAGCCGAGTACTACAAGATCCCAACTCTTGGAAAACATTATTCTCAACGCTGGGCTCAAGAAGACCTGTTAGAAGAGCAAAGAGAAGGGGCACGAGCCAACGACAAGAAGAAAAGCATGATGGGTCCACTTTCTGAACTTGATGCTAAAGATGTAGATGCCCTTCTGAAGAAATCTGAGTCTCAGCATGAGCCTCCAGAGGACGGATGCCCCTTCGGTCCGCTCACTCAGCGACTTCTACAAGCTCTTGTTGAGGAGAACATCATATCTCCTATGGAGGATTCCCCCATTCCAGACATTCCAGGGAAGGATGATGGAGCTGGTACATCACCTCGTAGCCAGGGGAAAGCCTTCAGtGTACCTCACACACGCTCTCTGGAGGCTCGTATAAGAGAAGAGCTGGTGTCTCAGGGGCTGCTGGACTCTGATGAGAGGCAAGGGGTCGGAGGAGAGTCTGAAGATGAGGTGCTGGCCGAACTGCAGAAAAGACAAGCTGAACTTAAAGCACTGACCGCACACAACCGCTCACGCAAACTGGAGCTGCTCAAGTTGGCCCGGGAAGAGATGCGCAAGCAGGAGCTTCGTCAGCGGGTGCGAGTGGCGGATAATGAGGTTATGGAGGCCTTCCGTCGCATCATGGCAGCCAGACAAAAGAAACGCACtccaacaaaaaaagagaaagatcAGGCGTGGAAAGCTCTGAAGGAGAGAGAAAGTATCCTCAAACTTTTGGACGGATGAATACGAGTGGCAGCTATAATATGATTCATTATGCATTTTCTCTCCTGTGTTTGTTGGACACATCATACATAAAACTTTAGACGACTTGAAGAACAtgtaaatgaacagttaatatattGTTCTTATGTTTTGACTACTCACTATCTAATATAATACCTGACATGACTAGCTGAATAAAGGTGTTTGACACTACAAGTTTCAAGTGACACTTGACATTACTGATGCCAGAAGTATGGCAACTTGAGTTTActtgtttttcttttcctttatttcatTATGTTTTTGCCTTTCTGTACAGTTCCCACATGCAGCTGATTTCATACAATACAATTTGTTCACCTTCATACTGTTTTAAACTGGCACAATTTACTTTTTGTTTGTGGAACAAATAATAAATGAGGGAAAAATGGTAACCAGAATAAGAATGTCATAAACACTGaggtattttaaaataaaatagtatatatGTTGTGTTACACAGAAGAGGGAAATACTTATTGTAGGTTTGGAATGACGTGAGGATGATGAAATCGTGACAGGGTTATTTTTGGGTGACAACATGAGTGGCAACACCACaacatatttttgacatttttgttacAACCTGGCATAGACCAAGAAGAGAACGTGTTATTTCgagttttttatatattaaaaaaagaaataaatcttTGTATAAATGTAAGAGTTTGTAAAGTAATGCATATTTACCCGTTGGCTTTGTTAAATTCAGTCAtatcattttgacattttgtaaACTTTTCAACCATTTTATTGCTgttgcatgtttgtgtttttgaaaataaaacgAAGCTTTGATAAATTGCTAAGGATCATGTCACATTGTATGCAAAGCAGTGGTTTGTAGAGTTATATCAGGTTGTGCGTACAGAGGGCGCCATTTTGTGTTGACACATTCTTCCAGTGAACACCACAATCGTTGCTCTCTGATGATCATACGCATTTAACCTTAAAATTAGGAGTAGTTCGTGACTGGTGAGAGTTTAATGTATATTACAGTCTTATATTAATAGTGTCTGATTAGTCAGTGCATTTGTATGTGTTTGCCAGTTGCTGAAGGTGCCTAATCTGTGCACAAACCGTTGCATGTTAACGTTAGCAGTTCAGTAGAAGCGAGTTTTGAGGTGTCGATTTTTAAGTAAACTCTTTCAGATGCACTTAAACACGTTTTAGAGTGAAGTAAGGAAAAAATATGTTGCTGGAGTTTTAACGTGCAGAACTTAAGTTGCATCTACTGCTTCGTGAAATAATGGTTCTTTTATGTCGGATCTTCTTAATGAAGTGGCTGTTATGAGGCAAGAATCGTTGGATGAGCTAATAATAATAGCTAGAATATGAAGAAAAGGAATAAACTTTCATTGCTGAGACCACATCATACTCTGGTTTTCTGGCGCCATGGCGCGAAACCACGGCATGACGTTTTACGTAATGACGTAAAAATACTGAACAGACCTCATAAAGGATCGGAT
>TCONS_00006606
TTTTGTGTTGACACATTCTTCCAGTGAACACCACAATCGTTGCTCTCTGATGATCATACGCATTTAACCTTAAAATTAGGAGTAGTTCGTGACTGGTTTGTCACACCAGGATGTGTGGAAGAACGGCTTGCACACTTGCACCACATGAGCTTAGTCGTGCATCTCATTATCGAGACCGAACAGGACAACGACGCCCACCCCGCTGGAAGGATGGAGACTCTGACAAATACCGTCCTTCATACAACAAGAGTCCTCAGTCCTTCAGTCCTGTGCTTCTGTCCAACAGACACTTCAACAAGGATGCTCCTGTAGATGAGTGTGTGCTGGCAGCGATGCGCTGGGGTCTCGTCCCAGCCTGGTTTAAAGAGAACGACCCCAATAAGATGCAGTATAACACCTCTAACTGTCGCAGTGAAAGCCTGCTTGAAAAGAAGTCTTACAAGGATCCTCTTCTGAAAGGTCAGCGCTGCGTTATTCTGGCTGACGGCTTCTACGAATGGAGGCGGCAGGAGAAGGACAAACAACCTTTCTTCATTTACTTTCCACAAAGCCAAGGAGGACAAGTACCCAGTCCACAAAGTACACAGGAACTAAAAAGTGACCTAGAATTGGACCAAGGAGAGAGTGATCTAGACACCAGTGACTGGACTGGGTGGCGTCTGCTTACAATAGCAGGGCTGTTTGACTCCTGGACTCCTCCTTGTGGTGGAGAGACTCTGTACACTTACACAGTCATTACCGTAGACGCTTCTCCAAACCTTCAGAGCATCCATGACAGGATGCCGGCAGTTCTGGATGGAGAGGATGAGGTAAGACGGTGGTTGGATTTCGGAGAAGTGAAGTCACTGGAAGCTATAAAATTGCTCCAACCGAAGTCTTGTCTGACCTTTCACCCCGTCTCCTCATTGGTCAACAATTCGCGCAATAACTCTCCAGAATGTCTGCAGCCTGTGGACCCCACGATCAAGAAGAGCACTAAACCCACAGCCAGCAGTAAAATGATGATGAGCTGGCTGAAAACAGCTTCGCCAACTAAGAGGAAGAGTCCTGATGAAGATACTTCAGATAAAGGACCTGAAGAAAAGCCTGCAGCAGAGAAGCAGAACAAGCCGACTGGCCCTCTACAGCAATGGCTGATGGGAACGAGTTCTAGTAAGAAACCAAGGACTTAAACACTTAGTTAAAGTTTCTTGCAATACAATAGATGTTATATCTCTTCTCAATGGTTAAATGTATCTGGTAAACAAGGTAAGCACTTTTGACATGGTTCTGTTTTCACGATTTTATATAAGATGCAAATAAAATTCACATTCATCAATTTTATTGGGTTATTTCACAAACAAACAGCGCACAACGGAATTATtcaacaatttaattttatttccattattaCTTTGAAATACATTAATCTTGAACAATGTAtatgctgtgcattttgtttcattaaATGTCATGAACAAT
>TCONS_00006607
TGTGTTGACACATTCTTCCAGTGAACACCACAATCGTTGCTCTCTGATGATCATACGCATTTAACCTTAAAATTAGGAGTAGTTCGTGACTGGTTTGTCACACCAGGATGTGTGGAAGAACGGCTTGCACACTTGCACCACATGAGCTTAGTCGTGCATCTCATTATCGAGACCGAACAGGACAACGACGCCCACCCCGCTGGAAGGATGGAGACTCTGACAAATACCGTCCTTCATACAACAAGAGTCCTCAGTCCTTCAGTCCTGTGCTTCTGTCCAACAGACACTTCAACAAGGATGCTCCTGTAGATGAGTGTGTGCTGGCAGCGATGCGCTGGGGTCTCGTCCCAGCCTGGTTTAAAGAGAACGACCCCAATAAGATGCAGTATAACACCTCTAACTGTCGCAGTGAAAGCCTGCTTGAAAAGAAGTCTTACAAGAGTGATCTAGACACCAGTGACTGGACTGGGTGGCGTCTGCTTACAATAGCAGGGCTGTTTGACTCCTGGACTCCTCCTTGTGGTGGAGAGACTCTGTACACTTACACAGTCATTACCGTAGACGCTTCTCCAAACCTTCAGAGCATCCATGACAGGATGCCGGCAGTTCTGGATGGAGAGGATGAGGTAAGACGGTGGTTGGATTTCGGAGAAGTGAAGTCACTGGAAGCTATAAAATTGCTCCAACCGAAGTCTTGTCTGACCTTTCACCCCGTCTCCTCATTGGTCAACAATTCGCGCAATAACTCTCCAGAATGTCTGCAGCCTGTGGACCCCACGATCAAGA

Function

symbol description
tada3l Predicted to enable transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in histone H3 acetylation; histone H4 acetylation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Orthologous to human TADA3 (transcriptional adaptor 3).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0043967 histone H4 acetylation biological_process
GO:0000124 SAGA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6725 Predicted to enable transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in histone H3 acetylation; histone H4 acetylation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Orthologous to human TADA3 (transcriptional adaptor 3).
ZDB-GENE-070620-10 Predicted to enable peptidase activity and single-stranded DNA binding activity. Predicted to act upstream of or within cellular response to DNA damage stimulus; protein-DNA covalent cross-linking; and proteolysis. Orthologous to human HMCES (5-hydroxymethylcytosine binding, ES cell specific).

Ensembl:

ensembl_id ENSDARG00000058220 ENSDARG00000077471

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006604 False 2558 mRNA 0.41 9 16152316 16166040
TCONS_00006605 False 2804 mRNA 0.42 8 16153207 16166705
TCONS_00006606 False 1461 mRNA 0.44 7 16166117 16179190
TCONS_00006607 True 786 mRNA 0.49 5 16166120 16177207

Neighbor

gene id symbol gene type direction distance location
XLOC_003370 pimr204 coding upstream 10780 16137302 ~ 16141536 (+)
XLOC_003368 ctbs coding upstream 68708 16070438 ~ 16083608 (+)
XLOC_003367 agtrap coding upstream 88025 16040517 ~ 16064291 (+)
XLOC_003366 draxin coding upstream 139202 15931188 ~ 16013114 (+)
XLOC_003365 pank4 coding upstream 236528 15878343 ~ 15915788 (+)
XLOC_003372 slc25a26 coding downstream 37719 16216909 ~ 16324575 (+)
XLOC_003373 kbtbd8 coding downstream 395435 16574625 ~ 16588044 (+)
XLOC_003374 NA coding downstream 913888 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 coding downstream 958658 17137848 ~ 17141887 (+)
XLOC_003376 CR631124.1 coding downstream 1149375 17328565 ~ 17328681 (+)
XLOC_003369 CR854846.2 misc upstream 29234 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 3440320 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 3458053 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 3466717 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 3472288 12679732 ~ 12680028 (+)
XLOC_003363 FP016142.2 non-coding upstream 350920 15799383 ~ 15801396 (+)
XLOC_003362 FP016142.6 non-coding upstream 373065 15776072 ~ 15779251 (+)
XLOC_003359 NA non-coding upstream 810903 15339344 ~ 15341413 (+)
XLOC_003358 CR550302.2 non-coding upstream 1133792 15017185 ~ 15018524 (+)
XLOC_003377 BX571952.1 non-coding downstream 1261401 17440591 ~ 17513632 (+)
XLOC_003378 CR589944.3 non-coding downstream 1739953 17919143 ~ 17920013 (+)

Expression


Co-expression Network