XLOC_003373 (kbtbd8)


Basic Information

Item Value
gene id XLOC_003373
gene name kbtbd8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16574625 ~ 16588044 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006610
GCGGCCTCGAAGCCCTATTGGCTGTTGCCAACATTGGGCGAAGCTGATTGGCTAATGCCTGTTTCCGGGGCTCCATTCCATTAGTGACGTTTTCCCAGTCGCCGTGAACAGATTGGGGAGAATGGCTGCCAGTGGAGACGTAGGAAAGCTGTTACAAGTACAGAATGGAACTCCAGCAAGCACAAGCTACAACGGGGTAGATGCCCTGCATGCCTGTAACATCCTCCAGCAGCTAAAAGCCTTGTACGACGAAGCTCAGCTGACTGACATTGTCGTGGAAGTGGACCATGGGAAGACATTCTCTTGTCACAGAAATGTTCTTGCTGCCATCAGTCCTTATTTCAGATCTATGTTCACAAGTGGCCTTACAGAGAGCAGTCAGCGGGAGGTGCGGATTGTTGGCGTGGAGTCAGAGTCCATGCATTTGGTTCTGGACTATGCTTACACCTCACGGGTCACTCTCACAGAGTCGAACGTGCAGGCTCTGTTCACAGCTGCCAGCATCTTCCAGATCCCAGCCCTCCAAGACCAATGTGCCCAGTTCATGATCAGCCGTTTGGACCCTCAGAACTGCATTGGGGTCTTCATGTTTGCAGATGCCTACGGTCACCAGGAGTTGCGAGAGCGTTCACAGGATTACATCCGCAAGAAGTTTCTATGTGTAATGGGCGAGCAAGAGTTCCTTCATCTGACCAAAGATCAGCTGGTCAGCATTCTTAACAGTGACGATCTGAACGTGGAGAAAGAGGAACATGTGTATGAAAGCATTGTGCACTGGTTGGAGTATGATTGCTCACGTCGGGAAGCCGATTTACCGGAGGTTTTTGCCAAATGCATTCGCTTGCCACTTTTGGAAGAGGCCTTTTTGAGTCGTATACCTCCAGCCTTCGCTCTGGCCTTGTCTAGGGATTCCttggataagagttggctcaatGGCACCAATGGTTGCTCTCAAAGGCTTGGTATGACTGCATCTGAGATGATCATCTGCTTCGATGCTGCTCACAAGCATTCAGGGAAGAAGCAGACCGTGCCTTGCCTGGACATTGCCGCCGGGAAGGTGTACAAGCTGTGCAAGCCGCCCAATGACCTCCGAGAGGTTGGCATTTTGATTTCGTCAGAAAATGACATCTTCATTGCTGGAGGCTATCGGCCGAGCAATAGTGAGGTGTGCATTGATCACCGTGCAGAAAGCGACTTTTGGCAGTATGAACACGCTGGTAATAGGTGGCTTCCAAGGTCGCCCATGCTACGGGCACGCATCGGCTGCCGACTAGTGCACTGCTGTGGGAAACTTTACGCTCTGGGTGGTCGAGTGTATGAGGGGGATGGACGTAATGCATTAAAGTCCGTGGAGTGCTATGATGCCAGAGACAACTGCTGGACAGCGGTCAGCCCCATGCCGGTGGCCATGGAGTTTCACAGCACAATAGAGTATAAGGACCGCATCTATGTGCTGCAAGGAGAGTACTTTTTCTGTTTCGACCCTCGCAAAGACTATTGGGGCCATTTACCGTCCATGAACATTCCCCGAACTCAAGGTTTGGCTGCCCTGCACAAAAACTGCATCTACTACATAGCAGGCATCTGCAGGAACCACCAGCGCACATTCACTGTCGAGGTGTATGACATCGAGCAGAACACATGGTGCCGCAAAAGAGACCTTCCCTTCGACCAAGCAACCAGTCCCTACATAAAGGTGCTTCTGCTTCAGGGCCGATTGCATCTGTTCGTTCGAGCTACGCAGGTCATGGTCGAAGAACACGTGTTTCGCACCAGCCGCAAGAACTCACTCTACCAGTACGATGATGAAGCTGACCATTGGACAAAGGTCTATGAGACGCCGGACCGCCTCTGGGACCTTGGTCGCCATTTTGAGTGCGTGGTGGCCAAATTATACCCTCAGTGTCTTCAGAAAGTGCTGTGAGCAGCGAGGAGGGGGGGGAAGATTACGACACAACGTGCTGTTTGAGACAGCAGATCAATATTTTTGGAGGATTGGATGGTGGTACTACTCAATACATGGTGCTGTCTGTGTCCCCAATAGCAGAACTGCAGGGGAAGTCTTAAAGCGTTAAAGGTTCCAATCAATAAACTTGAGGGTGCTGTtcgaaaaagtaaaaaaaaaaaaaaggcagtatTTTACGTTTGACAATTGTGCACAAAGCACCCACACAATCGCTTGTTTTACAGTTTCAAAAGTGAATCATAAGTGCAATTATCTTTGGGGGTTTTCTCTCTTTTTGGCAGATGTTGAGTCATTTTTTGCTGCATTCTATCTAAAGTTTCTGTTGCTGTTTTGGCTTGGGTGATCGCGAGCAGTAGATGTCCTTAAGGACAAGCAGAATGTCAACAGACGAGTACAATTAAAGTAAAataggtgaaaaaaataaatatttaaagctaTAAATATTCATACGGGTATGATGAGCAAGTTTGCTCACTGTTAGTGTGAATACTGAGTTTTTAAATGGTCATGTCTTTCAGGTTTGCAGATGCGGCGGTTGATCAATGCAACCTACTAAGAGACTTTCTGTGGTTTGCTTAAGAATTTAGTTAGAGGATTTTCGATTATTAATGGAAATAACTTGTTTGCCAAGATGAACACATAGGTGGCTGtcgtttattttttaaaagtcttctCATTTATTTTAAGTCATTTCGTGTGTTGACTTAAACTTCACagcagtttaaaattttcatttgcttttattATGTGCCCAGCTTCCACATTGAAATCTATATCTTTGCAATTTCGCATCACCAGCCAGATCTTTAGTGAGGTTACAAGTTTATACTCAGTCTCCATATTGGAGAagataaggaaaaaaaataaacgcggaTACCAGCTTAATTTGTAGCTGAAATCAAAAGCGGGCAATTTGTTGACGGCCAAAACAACAGAACAGCTCAGATCAGGAGAGAACATGAAGCAGGTTAAAGAGGAGACAGCCAAAATGTGGATGCTCACAATCCACTGGCATTTATTGACTCCTCGTGTCTGAGACACTGGTGCAGTTTGAAAATGCCTCCAAAATGCCAAAATGTGTTCAAGGAAGGCCTAGCCTGCTCCTCGTGGCAGCAATAACAGGTGTTCTGTCATGGTTCCGTAGATAAAGTGCATTAGAAAACTCAAGCGATGAGGTTTTACAACAATAATTCcagaataaaaagtttaaaatggcCTTTGTTTTGCCACCAAGGGCAGAGTTGGTTAACGTTCAGTCAATTGTGTTGCTATGAAGGGATGTAATGGTGCCTGTTCACTTCAAAGGCACAGGCATCAGTGATGGAGCTAGCCGAGCCTGTTTGAAGTCTTACAATACAGTTTGCGTTTGCACTAAGGTGCTTTTACTTTAGAAAAGGTGTATTTTGCCACTGAGTCTAGTTTTCCGATAAAAGCACTCACACATGCTCTGTTTATTAAAGCTTGTTTGGTCACTGAACTTTGTAAAAAggtaattaaaatttttgtttaatcaACGGTAAGCTTAagaggatagttcaccccaaattgaAAAATCTGTAGTTTTCTCACCCTTGATTAAAACacaagtagatattttgaaaaatgcttgtagatggcactcattgacttccatagtgttttacTTCTACTATGTAAAACACTGGTGTCAAATACTGGAGGGCTGcatctctgcacagtttagtttccaccctgcttcaacatactGATCTGGGGTTTCAAACAGAACTGAAGGactaaattagtttgatcaggtgtgtttaattacatttggaaataaactgtgcagagctgcggccctccaggaacttgaTACATGTTTTGTAAAGcctaggtctcaaactcaattcctggagggctgcagctctgcacagttttgcctCCAATCCTATCTAATCTAGTAGTCTAggacaccttgattagttggatcaacGGTGTTTGATTaagattggagcaaaactgtgcagagcaacGGCCCTCCAAGAACTGAGTTTGAGATTTATGATGTAAAGCAGGGGTGTTTAAACTCagccctggagggccagtgtcctgctgagtttagccctaacttgcttcaacacacctgcccggaagtttctagcatatctagtaagaacttgattagctggttcaggtgtgtttgatggaactaaactctccaggacactggccctccacaACAGAGTGTGGACACCTCTGTAAAGCAACGAGTGTTCAttatcagctttcttcaaaatagtgTCTTTTTGTGTTTGAACAGAAGAAAAAATCTGTTTAATTCatgagagagagagtaaataatgaggtaattttcattttggggtgtaCAACCCCATTAAATCTTACAATTCAGGCTATTTTATGTACAAGGATTGCAAAATGATTTCTTcaaatcaataatttatttaaatataaatttgttgTAATTAACAAACTTGGAATTACAAGTTTATATCTCAGTTCTGATAAAAATAAGAGAAATATAAATGTAGAAAAATGTTCTGCTCAGTTCTGACCTTGATCTCAAAACTTTTGACTTTTGTCAATTTTACAATTTACTTTTTCTCAAAATTGCCTTTGTTAAACTTGACAAGTGTGTGAGAATTAATTATGAGATACATATTCTCACAATTGTAAGAGTCCATTTTGGGAGAAAAGTCAAGCATTTGTAGGGTGAAttataagaaaattaatgaaaaaaaaattattagtttttctttttttccccccttttttttttggtgtcagAAACAGGCTTGCCAACTCTGCAAATGaacactttctctctctttctctttgcaTCCCCTCATCTTTCAGTCTTGAAACATGGAgaaaaaaatatcttgttttttggTGCTGCTTTTTTGACAATCTTGTACAGaatatacagtgattttacagcCATTTGTCGTCGCTTGACACTTCCAAAAGTTGTCAGTCTTATATAAGTTATTGTGTCTCAACGTTTGTTTCGTTTTTTCCAGCCTCATGTTTATTTCATCATGCAGGTTCCCGATTTTGCACTACATTGTTTCCTCCCTGGAAAGCGCTCTGTTTTTCAGACACGGAGGCTGAAGACGTGGTAAACGGCGTCTTTAAATAGGACAGCTGATGCCCAGCCTCATCTGGAAGGGAGGTGGAGAAGAAATCGCATTATTTTTTTGGTGCAAATGCACGTTTCACATACTTGCGCTCAGTAGCATGGGAACCAGAAATGGACACTTCTCAGGATTATTGTCAATACACAGTACTgtatttaaatggtttgttgtatGTGTAATATACTGTAACATATGTTTGCTGTACTTGCacagttttttttacactattttttttgctttttttcctttattttgaacttgaatagtttttttgtttgtttgtttttcctacttttagatgggtgtgtgtgtgtttcttttttttaatttttgaatatTTACTCTTAGGTTTGTTAGATTTTatgattttgctttgttttaaaaaaattgtgaaacaaaacattaacaagcatttttgttcttcagtgtgtgttcatttagttttttttttgtgattgcgTCAGTCTTAAAGAACACAAAGCATTACAGAAAATAAGTTATGACAGTGCTATTTTCCAAAACACTAGTCTGTCTAGATGTTAAATAAAAGCTTTGAAAGAATTTATAAACGATAGTTTTGTGTCGCTGGCTGCTGCGGGTGTGAATGCTCTATCACAGGAACTTCTTTTTAGTTTCTCTCGGCTTGCTGTTAATTTATCCACAGAAGTTTAtacagtgttttctttttcttttgtgttcttgATTTGCATTTGATTTTGTATGTCTTTGGTTTGCTTGTATGTATGGTGTGAGAGTTTAGTAAACATTCATTGATCTCTACTGTGAAATTCACCTTGcacataatttgaaaaataaaacaataaaaagtaaa

Function

symbol description
kbtbd8 Predicted to be involved in neural crest cell development; neural crest formation; and protein monoubiquitination. Predicted to act upstream of or within regulation of translation. Predicted to be located in Golgi apparatus and spindle. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including adaxial cell; diencephalon; neural plate; primordial germ cell; and tail bud. Orthologous to human KBTBD8 (kelch repeat and BTB domain containing 8).

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0014029 neural crest formation biological_process
GO:0014032 neural crest cell development biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030114-8 Predicted to be involved in neural crest cell development; neural crest formation; and protein monoubiquitination. Predicted to act upstream of or within regulation of translation. Predicted to be located in Golgi apparatus and spindle. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including adaxial cell; diencephalon; neural plate; primordial germ cell; and tail bud. Orthologous to human KBTBD8 (kelch repeat and BTB domain containing 8).

Ensembl:

ensembl_id ENSDARG00000070698

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006610 True 5920 mRNA 0.41 4 16574625 16588044

Neighbor

gene id symbol gene type direction distance location
XLOC_003372 slc25a26 coding upstream 250050 16216909 ~ 16324575 (+)
XLOC_003371 tada3l coding upstream 395435 16152316 ~ 16179190 (+)
XLOC_003370 pimr204 coding upstream 433089 16137302 ~ 16141536 (+)
XLOC_003368 ctbs coding upstream 491017 16070438 ~ 16083608 (+)
XLOC_003367 agtrap coding upstream 510334 16040517 ~ 16064291 (+)
XLOC_003374 NA coding downstream 505034 17093078 ~ 17170177 (+)
XLOC_003375 CR769769.1 coding downstream 549804 17137848 ~ 17141887 (+)
XLOC_003376 CR631124.1 coding downstream 740521 17328565 ~ 17328681 (+)
XLOC_003377 BX571952.1 coding downstream 852547 17440591 ~ 17513632 (+)
XLOC_003378 CR589944.3 coding downstream 1331099 17919143 ~ 17920013 (+)
XLOC_003369 CR854846.2 misc upstream 451543 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 3862629 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 3880362 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 3889026 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 3894597 12679732 ~ 12680028 (+)
XLOC_003363 FP016142.2 non-coding upstream 773229 15799383 ~ 15801396 (+)
XLOC_003362 FP016142.6 non-coding upstream 795374 15776072 ~ 15779251 (+)
XLOC_003359 NA non-coding upstream 1233212 15339344 ~ 15341413 (+)
XLOC_003358 CR550302.2 non-coding upstream 1556101 15017185 ~ 15018524 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000056_00152687_00160917 KBTBD8 coding CI01000056 null 152553 ~ 161101 (-)