RNA id: TCONS_00006605


Basic Information

Item Value
RNA id TCONS_00006605
length 2804
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_003371
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16152316 ~ 16179190 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATAGATTTCTGTAAATGCAGAGATGAGTGAACTGAAGGATTGCCCCCCATTAAAGTACTATGACTTCAAACCTGTGGACCACGTGAAAGTGTGTCCACGCTACACTGCAGTGCTCAGCCGCTCAGAGGATGATGGCATTGGCATTGAAGAGCTCGACACGCTTCAGCTGGAGCTGGAAACACTCTTGTCCTCTGCGAGCCGACGTCTCCGAGCACTGGAGGAACAGAGACAGATTCTTACAGATTGGCAGGACAAGAAAGGGGACAAAAGGTTTTTGAAATTAGAGAAAGATCCGGATCTTGCAGCCTCTTCTCGACATTCCAAGCCCAAGAAACAGAAGCTTGATGTAAAAGGAAGTCATGGTCCGGGACCTGGACCTGGCAGACCAAAGTCTAAAAACATTCAGACCAAGGTGCAGGACTTTGAATTTGAAGTGGACCCCCAAGATATACCCCGTAATCCCAAAAATGATGCTCCCAACAGGTTCTGGGCCTCGGTGGAGCCTTACTGTGCTGACATCACAAATGAAGAAATCCGCGTTCTAGAAGAGCTGCTCAAAGCCCCTGATGATGAAGCCGAGTACTACAAGATCCCAACTCTTGGAAAACATTATTCTCAACGCTGGGCTCAAGAAGACCTGTTAGAAGAGCAAAGAGAAGGGGCACGAGCCAACGACAAGAAGAAAAGCATGATGGGTCCACTTTCTGAACTTGATGCTAAAGATGTAGATGCCCTTCTGAAGAAATCTGAGTCTCAGCATGAGCCTCCAGAGGACGGATGCCCCTTCGGTCCGCTCACTCAGCGACTTCTACAAGCTCTTGTTGAGGAGAACATCATATCTCCTATGGAGGATTCCCCCATTCCAGACATTCCAGGGAAGGATGATGGAGCTGGTACATCACCTCGTAGCCAGGGGAAAGCCTTCAGtGTACCTCACACACGCTCTCTGGAGGCTCGTATAAGAGAAGAGCTGGTGTCTCAGGGGCTGCTGGACTCTGATGAGAGGCAAGGGGTCGGAGGAGAGTCTGAAGATGAGGTGCTGGCCGAACTGCAGAAAAGACAAGCTGAACTTAAAGCACTGACCGCACACAACCGCTCACGCAAACTGGAGCTGCTCAAGTTGGCCCGGGAAGAGATGCGCAAGCAGGAGCTTCGTCAGCGGGTGCGAGTGGCGGATAATGAGGTTATGGAGGCCTTCCGTCGCATCATGGCAGCCAGACAAAAGAAACGCACtccaacaaaaaaagagaaagatcAGGCGTGGAAAGCTCTGAAGGAGAGAGAAAGTATCCTCAAACTTTTGGACGGATGAATACGAGTGGCAGCTATAATATGATTCATTATGCATTTTCTCTCCTGTGTTTGTTGGACACATCATACATAAAACTTTAGACGACTTGAAGAACAtgtaaatgaacagttaatatattGTTCTTATGTTTTGACTACTCACTATCTAATATAATACCTGACATGACTAGCTGAATAAAGGTGTTTGACACTACAAGTTTCAAGTGACACTTGACATTACTGATGCCAGAAGTATGGCAACTTGAGTTTActtgtttttcttttcctttatttcatTATGTTTTTGCCTTTCTGTACAGTTCCCACATGCAGCTGATTTCATACAATACAATTTGTTCACCTTCATACTGTTTTAAACTGGCACAATTTACTTTTTGTTTGTGGAACAAATAATAAATGAGGGAAAAATGGTAACCAGAATAAGAATGTCATAAACACTGaggtattttaaaataaaatagtatatatGTTGTGTTACACAGAAGAGGGAAATACTTATTGTAGGTTTGGAATGACGTGAGGATGATGAAATCGTGACAGGGTTATTTTTGGGTGACAACATGAGTGGCAACACCACaacatatttttgacatttttgttacAACCTGGCATAGACCAAGAAGAGAACGTGTTATTTCgagttttttatatattaaaaaaagaaataaatcttTGTATAAATGTAAGAGTTTGTAAAGTAATGCATATTTACCCGTTGGCTTTGTTAAATTCAGTCAtatcattttgacattttgtaaACTTTTCAACCATTTTATTGCTgttgcatgtttgtgtttttgaaaataaaacgAAGCTTTGATAAATTGCTAAGGATCATGTCACATTGTATGCAAAGCAGTGGTTTGTAGAGTTATATCAGGTTGTGCGTACAGAGGGCGCCATTTTGTGTTGACACATTCTTCCAGTGAACACCACAATCGTTGCTCTCTGATGATCATACGCATTTAACCTTAAAATTAGGAGTAGTTCGTGACTGGTGAGAGTTTAATGTATATTACAGTCTTATATTAATAGTGTCTGATTAGTCAGTGCATTTGTATGTGTTTGCCAGTTGCTGAAGGTGCCTAATCTGTGCACAAACCGTTGCATGTTAACGTTAGCAGTTCAGTAGAAGCGAGTTTTGAGGTGTCGATTTTTAAGTAAACTCTTTCAGATGCACTTAAACACGTTTTAGAGTGAAGTAAGGAAAAAATATGTTGCTGGAGTTTTAACGTGCAGAACTTAAGTTGCATCTACTGCTTCGTGAAATAATGGTTCTTTTATGTCGGATCTTCTTAATGAAGTGGCTGTTATGAGGCAAGAATCGTTGGATGAGCTAATAATAATAGCTAGAATATGAAGAAAAGGAATAAACTTTCATTGCTGAGACCACATCATACTCTGGTTTTCTGGCGCCATGGCGCGAAACCACGGCATGACGTTTTACGTAATGACGTAAAAATACTGAACAGACCTCATAAAGGATCGGAT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0043967 histone H4 acetylation biological_process
GO:0000124 SAGA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6725 Predicted to enable transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in histone H3 acetylation; histone H4 acetylation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Orthologous to human TADA3 (transcriptional adaptor 3).

Ensembl:

ensembl_id ENSDART00000192356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006597 lncRNA upstream 107582 16040587 ~ 16045625 (+) False XLOC_003367
TCONS_00006595 lncRNA upstream 177359 15972519 ~ 15975848 (+) True XLOC_003366
TCONS_00006585 lncRNA upstream 351811 15799383 ~ 15801396 (+) True XLOC_003363
TCONS_00006584 lncRNA upstream 373956 15776072 ~ 15779251 (+) True XLOC_003362
TCONS_00006583 lncRNA upstream 375987 15776072 ~ 15777220 (+) False XLOC_003362
TCONS_00008579 lncRNA downstream 926373 17093078 ~ 17170177 (+) True XLOC_003374
TCONS_00006611 lncRNA downstream 971143 17137848 ~ 17141076 (+) False XLOC_003375
TCONS_00006612 lncRNA downstream 971147 17137852 ~ 17141052 (+) False XLOC_003375
TCONS_00006613 lncRNA downstream 971147 17137852 ~ 17141887 (+) False XLOC_003375
TCONS_00006614 lncRNA downstream 971735 17138440 ~ 17141882 (+) False XLOC_003375
TCONS_00006601 mRNA upstream 11671 16137302 ~ 16141536 (+) False XLOC_003370
TCONS_00006602 mRNA upstream 13158 16137771 ~ 16140049 (+) False XLOC_003370
TCONS_00006603 mRNA upstream 13158 16138065 ~ 16140049 (+) True XLOC_003370
TCONS_00006598 mRNA upstream 88916 16040680 ~ 16064291 (+) True XLOC_003367
TCONS_00006596 mRNA upstream 90294 16040517 ~ 16062913 (+) False XLOC_003367
TCONS_00006608 mRNA downstream 50204 16216909 ~ 16324575 (+) False XLOC_003372
TCONS_00006609 mRNA downstream 50259 16216964 ~ 16282275 (+) True XLOC_003372
TCONS_00006610 mRNA downstream 407920 16574625 ~ 16588044 (+) True XLOC_003373
TCONS_00006631 mRNA downstream 1817462 17984167 ~ 17994777 (+) False XLOC_003382
TCONS_00006632 mRNA downstream 1817463 17984168 ~ 18081864 (+) False XLOC_003382
TCONS_00006600 other upstream 30125 16122786 ~ 16123082 (+) True XLOC_003369
TCONS_00006599 other upstream 69599 16070438 ~ 16083608 (+) True XLOC_003368
TCONS_00006591 other upstream 251012 15886970 ~ 15902195 (+) False XLOC_003365
TCONS_00006578 other upstream 1134683 15017185 ~ 15018524 (+) False XLOC_003358
TCONS_00006572 other upstream 1712381 14431365 ~ 14440826 (+) False XLOC_003353
TCONS_00006621 other downstream 1161860 17328565 ~ 17328681 (+) True XLOC_003376
TCONS_00006622 other downstream 1273886 17440591 ~ 17497093 (+) False XLOC_003377
TCONS_00006623 other downstream 1274602 17441307 ~ 17494543 (+) False XLOC_003377
TCONS_00006624 other downstream 1275182 17441887 ~ 17494277 (+) False XLOC_003377
TCONS_00006625 other downstream 1275182 17441887 ~ 17500788 (+) False XLOC_003377

Expression Profile

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