RNA id: TU121945


Basic Information

Item Value
RNA id TU121945
length 1437
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G90624
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38269426 ~ 38272172 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTTCCTGTATGCACGTCCATTTGTCTAAGGTACAGGTTCACCTCTAACCATCTGTAGGCTTGTGAGCAtggtacaataataataactagtAGATTTAATAAAAGCTTCCTATTTTCACTAGACCTGTTTTTTACAGATTTTCATCTTATGACCACCTGATGTTGGTTTGGCAGGTCATCGAACCATCACTGCAGTACATGGTTCGGGGGACCAGAACAAGAACTGCAGATGGTGACTCAGCAAGGCAAAGTACAGCCATGGTACAGACACAGGCTATACAGGCAGTAGATGAACTGTTCCTCTTCCTGAACTACCTTGCCCTTGGACTGAAGCAGAAGGACTTGGCCGACCGGTGGTGGATGTGGCCAAGGCCATTATCAATGCTGTCAGAGACCCTGATGCTAATGGAATAACATATGCATTAGTTGGGTAGGTGGTCAGCAATGAAATAACTTTATTTGAAACTCTGGGCCTCAGAGTAGAGTAAATGAGGACATTTGATAATGGGTAACAAAgcatagtctcactttgccagaccatccacacgctgcggagcggaggagggtctggctaatccacacagaattccgggatgggagaaaaacgtactCTGGCACTTGAACATTTCCTGGAGGGGTCAAATTTGTGAATCTGAGTGAGACGGGGGAGGACTGCCTTCTTGGCCCGCTCAACCCCTGAGATGACGTTATGTTCTGCCATCTGCATAGAAGCtctatgaagaaaaaaaacaacaacattggcATGATGTAAACAAATTGGCAAagggttaaaataaaaattaaaaaaataatgaatatttAGTAGTTAGGATCACTCAGTTAAAAGTGGGAAATATTAATACTGTACTTGTATGGCAGTTTTGTTATGCAGACATTTTTGTTCTCCAAGGACATCTAAGCAACTtgtgtggtggcaaattttattttaaccattattgattaatgattataaccatttgcttaaagattgttttaaacctccacaaaaatgctgttccttcctcttagactcttaaaggccagagagggacagcagcagccatgaactattagcctagtggtttttgtttaagaaaccctagcttctcattttgtttaactttttagctGACAAAGTAGAGAAGGCCACAAACCATGtttccttctgcctcctgagataaagggttgtttaggctaatgaaaagaacaggagcagaggggaaggtaaGGATGGGTTGACTTCTAATGATGTCCTATTTTCAACTCTGAccaggctaaaagataaagttagaggggtggcttggagagaggttttgactatatgatgatgtgatgtttagattttagtttagtaatgctcattcagttgtactgcatgtacctttgaatctgtattctcatattttgcaaaatataataaatgctcaaagaccag

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640021.1 lncRNA upstream 136244 38131887 ~ 38133182 (+) True LOC120563874
TU121918 lncRNA upstream 136300 38131892 ~ 38133126 (+) False LOC120563874
TU121879 lncRNA upstream 213862 38054509 ~ 38055564 (+) False G90583
TU121877 lncRNA upstream 213862 38054663 ~ 38055564 (+) True G90583
TU121878 lncRNA upstream 213862 38054663 ~ 38055564 (+) False G90583
TU121949 lncRNA downstream 30124 38302296 ~ 38303619 (+) False LOC120563884
XR_005640022.1 lncRNA downstream 30130 38302302 ~ 38303645 (+) True LOC120563884
TU121956 lncRNA downstream 180630 38452802 ~ 38454316 (+) True G90635
TU121985 lncRNA downstream 280155 38552327 ~ 38555712 (+) True G90655
TU121979 lncRNA downstream 284485 38556657 ~ 38558151 (+) False G90653
XM_039808361.1 mRNA upstream 23810 38210958 ~ 38245616 (+) True LOC120563882
XM_039808350.1 mRNA upstream 161339 38100538 ~ 38108087 (+) True ndufa9a
XM_039809303.1 mRNA upstream 170172 38084390 ~ 38099254 (+) True dyrk4
XM_039809304.1 mRNA upstream 171465 38084391 ~ 38097961 (+) False dyrk4
XM_039810056.1 mRNA upstream 234732 38022377 ~ 38034694 (+) False wfdc1
XM_039808351.1 mRNA downstream 663 38272835 ~ 38287885 (+) True LOC120563875
XM_039808356.1 mRNA downstream 88283 38360455 ~ 38361847 (+) True LOC120563880
XM_039808357.1 mRNA downstream 88283 38360455 ~ 38361847 (+) False LOC120563880
XM_039808358.1 mRNA downstream 88283 38360455 ~ 38361847 (+) False LOC120563880
XM_039808359.1 mRNA downstream 88283 38360455 ~ 38361527 (+) False LOC120563880
TU121880 other upstream 213862 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 234732 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 1805858 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2484010 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 3058495 35210860 ~ 35210931 (+) True trnaw-cca_9
TU122023 other downstream 386194 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 403403 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 604878 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1481422 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 1599518 39871690 ~ 39874177 (+) True LOC120563436

Expression Profile