RNA id: TU121879


Basic Information

Item Value
RNA id TU121879
length 279
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G90583
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38054509 ~ 38055564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtgtgtgtatgtgtctgtgtctgtgtgtctgtgtgtgtctgtgtctgtgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctctctctctgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640093.1 lncRNA upstream 331 38052905 ~ 38054178 (+) True LOC120564394
TU121864 lncRNA upstream 57736 37996560 ~ 37996773 (+) True G90575
TU121807 lncRNA upstream 356532 37697764 ~ 37697977 (+) True G90523
TU121568 lncRNA upstream 1331682 36721925 ~ 36722827 (+) True G90311
XR_005639937.1 lncRNA upstream 1458816 36594257 ~ 36595693 (+) True LOC120563368
XR_005640021.1 lncRNA downstream 76323 38131887 ~ 38133182 (+) True LOC120563874
TU121918 lncRNA downstream 76328 38131892 ~ 38133126 (+) False LOC120563874
TU121945 lncRNA downstream 213862 38269426 ~ 38272172 (+) True G90624
TU121949 lncRNA downstream 246732 38302296 ~ 38303619 (+) False LOC120563884
XR_005640022.1 lncRNA downstream 246738 38302302 ~ 38303645 (+) True LOC120563884
XM_039810056.1 mRNA upstream 19815 38022377 ~ 38034694 (+) False wfdc1
XM_039807656.1 mRNA upstream 46604 37997385 ~ 38007905 (+) True si:dkey-246g23.4
XM_039809417.1 mRNA upstream 75192 37947589 ~ 37979317 (+) True kcng4a
XM_039808258.1 mRNA upstream 147352 37815903 ~ 37907157 (+) False si:dkey-246g23.2
XM_039809303.1 mRNA downstream 28826 38084390 ~ 38099254 (+) True dyrk4
XM_039809304.1 mRNA downstream 28827 38084391 ~ 38097961 (+) False dyrk4
XM_039808350.1 mRNA downstream 44974 38100538 ~ 38108087 (+) True ndufa9a
XM_039808361.1 mRNA downstream 155394 38210958 ~ 38245616 (+) True LOC120563882
XM_039808351.1 mRNA downstream 217271 38272835 ~ 38287885 (+) True LOC120563875
XR_005640145.1 other upstream 19815 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 1590941 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2269093 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 2843578 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 3619192 34434089 ~ 34435317 (+) True G89836
TU122023 other downstream 602802 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 620011 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 821486 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1698030 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 1816126 39871690 ~ 39874177 (+) True LOC120563436

Expression Profile