RNA id: XR_005640093.1


Basic Information

Item Value
RNA id XR_005640093.1
length 448
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC120564394
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38052905 ~ 38054178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGTTCGCCCCTGTGTCCACTTGAACCTCGTTGCACGTGGGAGCTATCAATTAAGGGCAGTGTGGCACCATCCAGGTGGATCAAAGGGAGAGGCTAGGGGGAGGGACACTCACTTAGCAGAGGAGAGCGACGGAGAGGAGACAGCACTTTGGAGCTGGGAGTTTGATCTGGATTTTAGAGTAAAGAGTGAGATATTGAAAGAGGATGGAGAGGGCTGGGGCGTCAACCCAAAAGCCCAGAGCGATCAGGCAAGGACACAAATGTCCAATATGTGGGCTGGAGTACGCAGACTTAATGCAGCACCTTAAACTAGGTGAACGTGTGGTCAACAGAACAGAACTGGACCTGCTATCTAAGCTGGCACACAGACATTTCACGGCGAGCTTGGATTGCCCGGTACGTAACTGCAACTCCAGGAAGATGAACAGGCTGGACAAGCACCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121864 lncRNA upstream 56132 37996560 ~ 37996773 (+) True G90575
TU121807 lncRNA upstream 354928 37697764 ~ 37697977 (+) True G90523
TU121568 lncRNA upstream 1330078 36721925 ~ 36722827 (+) True G90311
XR_005639939.1 lncRNA upstream 1457212 36594156 ~ 36595693 (+) False LOC120563368
TU121876 lncRNA downstream 331 38054509 ~ 38055005 (+) False G90583
TU121879 lncRNA downstream 331 38054509 ~ 38055564 (+) False G90583
TU121877 lncRNA downstream 485 38054663 ~ 38055564 (+) True G90583
TU121878 lncRNA downstream 485 38054663 ~ 38055564 (+) False G90583
XR_005640021.1 lncRNA downstream 77709 38131887 ~ 38133182 (+) True LOC120563874
XM_039810056.1 mRNA upstream 18211 38022377 ~ 38034694 (+) False wfdc1
XM_039807656.1 mRNA upstream 45000 37997385 ~ 38007905 (+) True si:dkey-246g23.4
XM_039809417.1 mRNA upstream 73588 37947589 ~ 37979317 (+) True kcng4a
XM_039808257.1 mRNA upstream 145748 37815654 ~ 37907157 (+) False si:dkey-246g23.2
XM_039809303.1 mRNA downstream 30212 38084390 ~ 38099254 (+) True dyrk4
XM_039809304.1 mRNA downstream 30213 38084391 ~ 38097961 (+) False dyrk4
XM_039808350.1 mRNA downstream 46360 38100538 ~ 38108087 (+) True ndufa9a
XM_039808361.1 mRNA downstream 156780 38210958 ~ 38245616 (+) True LOC120563882
XM_039808351.1 mRNA downstream 218657 38272835 ~ 38287885 (+) True LOC120563875
XR_005640145.1 other upstream 18211 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 1589337 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2267489 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 2841974 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 3617588 34434089 ~ 34435317 (+) True G89836
TU121880 other downstream 331 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 604188 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 621397 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 822872 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1699416 39753594 ~ 39753665 (+) True trnap-ugg_2

Expression Profile