RNA id: XM_039807656.1


Basic Information

Item Value
RNA id XM_039807656.1
length 2824
RNA type mRNA
GC content 0.46
exon number 6
gene id si:dkey-246g23.4
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 37997385 ~ 38007905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTGTAAGTGACACCACCACCACTGCTGCATGTGACAAGGAAAGAGGGCCAAGCTATCAGGTTATGAAACCACACAAATCCTCGGGTGGCCTGCAGCATGATGGGTTCACTTTGACCACAGCAGACATTTGAATGTGGCAGATCAACATGGACTCCCCAGTGATGGCTCAGAAGGCGAGGGTAGTAGTGGCACCAGCGGCAGCCCCTGATGGTGGCTACGCCCGGTTCATCCTGCTCTCCTGCTTCCTGGTCTTTGGCCTGACCTATGGGGTCATTAAGGCCTTTGGTGTATTCTACGTTGAGATAAACAGACACTTTGAAGCCACAGCAACAGGAACATCTTGGATTACCTCTATTGCCGTGGCTACCCTTCACTTCTTGGCTCCTGTAGCATCTGCTTTGAGTGCTCGCTACAGCCATCGCTCTGTAGTAATAATGGGAGGACTGATGTGCGGCGTAGGAGTCGTGTTTGGGTCTTTCGCTCGTAACCTGAATGAACTCTACTTGACAGTGGGGTTCCTGAATGGTTTTGGCTATGCAATGACTTGGCCTACCACAGTGACCATGCTGGGCTTGTACTTTGAGAAGAGGCGCCCAGTGGCAAACGCCTTGGCCAGCTCTGGAGAGTGCGTCCTTACCTTTGTCCTCACACCCTTATTCCAGCTGTTGATTGACAGCTACTCCTGGAGGGGTGCTTTGCTAATCCTGGGTGGTCTGCAGCttaacctctgtgtgtgtgggatgcTGCTGAGGCCCCTAAAGGCCACCAGATACGTGATTTGTGAGGTCAAAGCAGAGGAGGAAGGCTTGTCCCAGGAATTGCTACCAAAAGACGACTCGGAGCAGAGTAAACCAAGCTTCCTAGatgcagaggagctgagagtaTCTGATGGTTCTGATCACGGGACAATCAAGGCATTTCTTGAGGACCCTGAAGAAATACCTAATTCAACCATGAAAATACAAGACTCAAACAACAGGACTAAGAGGGCTGAACTAAGGACCAAAATCCTTCGCTACGTAGACTATACCCTCATTACCGATGCAAAATTCATGGTTTACTCAATGTTTGGGGTGTTTGCTGCACTGGGTTTCTTTGCCCCAGGTCTGTTCCTGATTCCATATGCTCGTAGTAAGGGGATTGAGGAGTACCAGGCAGCTGCACTCATGTCCATCTCTGCAGTGTTGGACCTGTTTGGAAGAGTGTTCTTTGGCTGGTTGGCAAACTTGAGACTGGTGGAGATGGTGCTGCAGCTGACAGCAACTATGATTCTGCTGGGTACTGTGTTACTCCTCTGCCCGCTGGCCTCTTCTTACTTAGagctggctgctttcagcgcaGCATATGGTCTGATGTACGGTGCTGCGGTCACCATCCACATCACCATGCTGGCTGAGATTGTGGGCGTCAATAGGCTCGGAAGTGCGCTGGGGTTCTTCTTGCTCATACGCAGTAGCGGAGGCCTGCTTGGACCGCCCATTGCTGGGTTCTTTATTGACAAGATGAGCGATTACGGAACAGGTTTCCTCATGGCAGGAGTGTCCCTCATCGTCTCTGCTCTGTTCCTGATCCTCCTCCATCAGATGAACCGCAGGGGTCAGGGGTCGTCCACCAACAACCACCTTACAGACAATATGGGACAAAGCGTCAGAGCTGAAGCCAAAGAGCTAAACATGACATGAATAAAGGAAAAATGGTCAAATCAATGTTTTATTAAGATATTCAAAGTATTAGGGTACTTCGTCTTAAATTCTTTATTCtttaagtttttgttgttgaaagagATTTACTGTTGTATTAAGATATTGGTGGTTTTGGTGGTTTTGCAGTATTTCCTAAGTGAAAGGGCAAATTATAATAACAATTATGCAGGTGAAGGgtcttgcttttttttaaacgtgaAACATAAAATTTAACCCTTCTCCCtttaccttgcacggcagctggattctcaaATATCACACGAAAATCCTAGCCTGACATCATCATACACAGATTCTactcagaatatgagtctgataccGCTCCATTGGGCCGGGATTATgagggcgtgtttcaaccgaaccaggaaagaaaatgcccctgctctcaattggatagacctacaaccaatcagagcaacggagtatgtgacttttgtttaacttttgcCGAATCCCGTAGGAAGgacagcaaaaacatctttccaATCGACAAATACCTTGATCgtggttctctgttcctcttttaaaattaaTACGCTGTCTATATCTTTTATAACCGACGCGATGGCGGATTcgacacatctcaattctccggtggctgccatctttgttgtaaaaaaaTCAACCCAAGCTCGGCTGGCATCAGgctacaaaaatccatcttgtcaggcttcaaatCAGGTGTTTGTATCTGAACCATCAGCTCCTCCTGTGTGACAGTCCCAACGCAAATTTGCGCAAACGTGATAGAcggatggttcatccaatcacctgccaggttttatgttttttcaaGTGCCTGCCTTTTTCCAATGACAGCTAAGATgcttctgtgtaacaaaccatctggcgcgtCAGGTTAATCCTCTCTACCCCAGTCATTTCTGTACAGTCCCTCCAGTGTTCATGTTGAATATTGAATTCACTTTCTGAAATGCACTAAATTGTAGTAACATAACAAACTGCAGATACGTTTTATTTATGTCAGGAATGTGTCAATCGTAGATTCTCATGAATTTTAATTGATTTCGATCAAAGTCACAAGTTCACAAGTTGattcaaaaggcaaaaacatgTGTTCtgcatacagtatactgtctTAAAGTCATACTTTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121864 lncRNA upstream 612 37996560 ~ 37996773 (+) True G90575
TU121807 lncRNA upstream 299408 37697764 ~ 37697977 (+) True G90523
TU121568 lncRNA upstream 1274558 36721925 ~ 36722827 (+) True G90311
XR_005639939.1 lncRNA upstream 1401692 36594156 ~ 36595693 (+) False LOC120563368
XR_005640093.1 lncRNA downstream 45000 38052905 ~ 38054178 (+) True LOC120564394
TU121876 lncRNA downstream 46604 38054509 ~ 38055005 (+) False G90583
TU121879 lncRNA downstream 46604 38054509 ~ 38055564 (+) False G90583
TU121877 lncRNA downstream 46758 38054663 ~ 38055564 (+) True G90583
TU121878 lncRNA downstream 46758 38054663 ~ 38055564 (+) False G90583
XM_039809417.1 mRNA upstream 18068 37947589 ~ 37979317 (+) True kcng4a
XM_039808255.1 mRNA upstream 90228 37815654 ~ 37907157 (+) True si:dkey-246g23.2
XM_039810056.1 mRNA downstream 14472 38022377 ~ 38034694 (+) False wfdc1
XM_039809303.1 mRNA downstream 76485 38084390 ~ 38099254 (+) True dyrk4
XM_039809304.1 mRNA downstream 76486 38084391 ~ 38097961 (+) False dyrk4
XM_039808350.1 mRNA downstream 92633 38100538 ~ 38108087 (+) True ndufa9a
XM_039808361.1 mRNA downstream 203053 38210958 ~ 38245616 (+) True LOC120563882
unassigned_transcript_383 other upstream 1533817 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2211969 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 2786454 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 3562068 34434089 ~ 34435317 (+) True G89836
TU120882 other upstream 3576204 34381836 ~ 34421181 (+) True G89813
XR_005640145.1 other downstream 14472 38022377 ~ 38034694 (+) True wfdc1
TU121880 other downstream 46604 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 650461 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 667670 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 869145 38877050 ~ 38879902 (+) True G90693

Expression Profile