RNA id: XR_005639939.1


Basic Information

Item Value
RNA id XR_005639939.1
length 641
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id LOC120563368
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36594156 ~ 36595693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgcacgcaataggatagcgctacaaacaggcagagcaacgaagaagctgaactccaagtcttccagaagacagTTGTTCCCAGCAGCTGCAACCATAAGCCtgcccaccaactctatacacgatgtgattggcctgaccaaaattagttttttccagctcgcaagccaacggagagtgcctagactgaccctggctacaaaataaatttgctgccactaggTCTAGGGGATGCCTAGGACGCAACATGAAAAGGCCCCATCTTCCCCGTCTCCCAAGTAGCCACAAACAATTAGTAGATCAGCTGTTTCCCTGATGACAAAGAAGTTGGACCTCCCGACCAGATGAGAAGCGTGGCTGACTACAAGACAAGTCGGAGAGCGATGGTCACCTGTGTTTTAGTCAACAAATAGAGGAAGGACTCTTTGGCATTCCTGGGCCACGTGTGAATGGATGTGGACCAGCTGATCGTCCCAGGACAGGACACTACTACATGTAGCACACAGTGAACCACTCTCCGCACACAGCCTCCTGGGTCGGCCCAGACTAAGCCTTCCTACACAGCCTACTGttcactctttttcttttttaccgcTTGACTGGTTTGGTGTTGAATTCAATAAAAGAACATCAGCCATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121506 lncRNA upstream 62160 36531006 ~ 36531996 (+) False mt2
TU121503 lncRNA upstream 76239 36516035 ~ 36517917 (+) False anapc13
TU121468 lncRNA upstream 194086 36397291 ~ 36400070 (+) True G90241
TU121463 lncRNA upstream 225726 36312714 ~ 36368430 (+) True G90236
TU121465 lncRNA upstream 235938 36352310 ~ 36358218 (+) True G90238
TU121568 lncRNA downstream 126232 36721925 ~ 36722827 (+) True G90311
TU121807 lncRNA downstream 1102071 37697764 ~ 37697977 (+) True G90523
TU121864 lncRNA downstream 1400867 37996560 ~ 37996773 (+) True G90575
XR_005640093.1 lncRNA downstream 1457212 38052905 ~ 38054178 (+) True LOC120564394
TU121876 lncRNA downstream 1458816 38054509 ~ 38055005 (+) False G90583
XM_039807571.1 mRNA upstream 5000 36582894 ~ 36589156 (+) True zpd
XM_039809156.1 mRNA upstream 16297 36543768 ~ 36577859 (+) True nup93
XM_039809946.1 mRNA upstream 58269 36534215 ~ 36535887 (+) True steep1
XM_039809863.1 mRNA upstream 62160 36530973 ~ 36531996 (+) True mt2
XM_039810065.1 mRNA upstream 76235 36516011 ~ 36517921 (+) True anapc13
XM_039809261.1 mRNA downstream 1232 36596925 ~ 36621244 (+) True mmp15a
XM_039808965.1 mRNA downstream 30205 36625898 ~ 36662806 (+) True LOC120564181
XM_039808365.1 mRNA downstream 71417 36667110 ~ 36683486 (+) True lrrc29
XM_039808366.1 mRNA downstream 71417 36667110 ~ 36683486 (+) False lrrc29
XM_039808512.1 mRNA downstream 133214 36728907 ~ 36759824 (+) True c8h12orf4
unassigned_transcript_383 other upstream 130588 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 808740 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 1383225 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 2158839 34434089 ~ 34435317 (+) True G89836
TU120882 other upstream 2172975 34381836 ~ 34421181 (+) True G89813
XR_005640145.1 other downstream 1426684 38022377 ~ 38034694 (+) True wfdc1
TU121880 other downstream 1458816 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 2062673 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 2079882 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 2281357 38877050 ~ 38879902 (+) True G90693

Expression Profile