RNA id: TU122548


Basic Information

Item Value
RNA id TU122548
length 1252
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G91052
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39895239 ~ 39896490 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccATGAAAATATTAACCATTGGCACTTAATTTACTcaatatttaaaacaatttcCCATTTACCTAAAACGGAACAAAATCAGTCCAGGAATGTGGAGATAAATGGTTCCATTACAGCAGATACTGAGCATTACTTTGACATTTGTAATTTACTTACATAACTTGGCTATGGATCAAAAATCATTTGCATCAATACAcccggcaaaaaaaaaattaattgtaATTAAAAGAACATCACAGGAGTCAGGGAGCTTGATGACAATTTTCAAAATGATTGTATGGGACAACTCAAGTACGGAAGCCCATCTCTGCCAGAAAAATAAACACCAagtagaaattaaaaaaaaaaaatgtagggaatgataaaaaaatgatgaaataaaTTCTTGGTATAGTCAAAATTAGGATTTCATCACAATTATGATCTCTCAACGTTGACATGCCAGTTTAGACAATTTATAAGGTCCAGCTAGCCCAAACTAATGCAGGGTTCAGACTACACAATGTTTTTGTTACGGGGGTCACGGAGTCAGATTAGTCAAATTATTAGAATTTAAGATCTCATTAGTTTAATTTAGCattaataattttattattcCACTGTTTCCTTCCCCTTCCTTAGGAGAAATAAGCCTGGCATATGTACCAATCAGAGGGCAGCTACTTCATTAGTGTTACTTAATGTTCCTTTAGTGTTGGCTTAACACTGTGAATTAACATTCTCTTGCCTGCTTTATGCTCCTGGACATTGTAAGCTCCATGGACATTTACTactttgacctctgacctttttctctctctctcgatacAAGAGTACAACATGTGGAATTCATGTTTATGGTCTTAACATGGGTCGGATGAGAAGATCAACGGAACTCGTAACGAAATAGACCTTACTAAAAAGCTCTGAAATCATACGCACATAGAGTAGTCAACCCAGCTGATGAAGATGCCCAACAGGacacacaaaaaatgttgaCTACCAGCTCTGGGGTCAACACTAAGATTTTTCTTTCACAAAAAACCCATCGAAAACAAGATTGGACAAAATGGGGAGAAAaacccattaaaaaaaaaaacgtcaaaaaatttcaccaaattaaacaaaaataaaattaaaaaaaatcaaaagtgtGAAAAGATGTCGGGAAAACAGTCAAAAGCATCAAGCACCAACTCAATCCTTGATTGGCCAACGGGACATTTGAATCAAATGATTATGATACGATGACGCCCAAACAGGGCGAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122571 lncRNA upstream 2144 39892529 ~ 39893095 (+) True G91069
TU122567 lncRNA upstream 2257 39892493 ~ 39892982 (+) False G91069
TU122569 lncRNA upstream 2257 39892529 ~ 39892982 (+) False G91069
TU122568 lncRNA upstream 2257 39892554 ~ 39892982 (+) False G91069
TU122570 lncRNA upstream 2257 39892612 ~ 39892982 (+) False G91069
TU122547 lncRNA downstream 3540 39900030 ~ 39900922 (+) True G91051
TU122573 lncRNA downstream 6634 39903124 ~ 39903464 (+) True G91070
TU122574 lncRNA downstream 7801 39904291 ~ 39904523 (+) True G91071
TU122545 lncRNA downstream 14097 39910587 ~ 39970912 (+) True G91049
TU122578 lncRNA downstream 24015 39920505 ~ 39921080 (+) True G91074
XM_039807593.1 mRNA upstream 21062 39871711 ~ 39874177 (+) False LOC120563436
XM_039807997.1 mRNA upstream 208190 39604241 ~ 39687049 (+) True bcar1
XM_039809297.1 mRNA downstream 48226 39944716 ~ 39963408 (+) True ric8a
XM_039809298.1 mRNA downstream 48226 39944716 ~ 39963408 (+) False ric8a
XM_039809299.1 mRNA downstream 77128 39973618 ~ 39974980 (+) True LOC120564391
XM_039809947.1 mRNA downstream 374033 40270523 ~ 40277195 (+) True dnajc24
XM_039809936.1 mRNA downstream 479810 40376300 ~ 40400951 (+) True LOC120564733
TU122542 other upstream 21062 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 141574 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1015337 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1215152 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 1057118 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1569214 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1572753 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 1572753 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 1572753 41469243 ~ 41495311 (+) False vps9d1

Expression Profile