RNA id: TU122571


Basic Information

Item Value
RNA id TU122571
length 567
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G91069
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39892493 ~ 39893095 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCggtttatgctttttttttcaatgctttaggcactttgttttaacgtttttgatgctttactaaatgttttgccactttttcggaagttttttggcacttttacgatgtttttggcACTATCTCAGACAatttaaactctttttttccccggcctttttccaactttcttGGTGCTTTATTCAACGTATTTTTCGCTGGCTGAGGAACGTTTTTGGGGCATTATGAGGCCCAAattgtaagtgagaagacttacattttgagtcatgcaataatacagtcaaaatatttgactttttctcttaaataaaagcatatcaataatctctccatgtctggcccttgatgtggttctcattttccagtgtggccctctgggaaactgagtttgacacccctgttctAATGTATCAATGAATTACAACtgccaaaagaaaaagatgttGAATTTTActacttatttaactgtacaTGTTTGATTGTATTCATTAAAAGGTTAAAATGGtatttgctttgttgtttttattgaccAGATGCAAAACATGTTGGTATAGGTCTGGTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122565 lncRNA upstream 176 39890751 ~ 39892353 (+) True G91068
XR_005640143.1 lncRNA upstream 8704 39879863 ~ 39883825 (+) True LOC120564773
TU122563 lncRNA upstream 13801 39878484 ~ 39878728 (+) True G91066
TU122561 lncRNA upstream 14163 39877719 ~ 39878366 (+) True G91064
TU122546 lncRNA upstream 16795 39874231 ~ 39875734 (+) True G91050
TU122548 lncRNA downstream 2144 39895239 ~ 39896490 (+) True G91052
TU122547 lncRNA downstream 6935 39900030 ~ 39900922 (+) True G91051
TU122573 lncRNA downstream 10029 39903124 ~ 39903464 (+) True G91070
TU122574 lncRNA downstream 11196 39904291 ~ 39904523 (+) True G91071
TU122545 lncRNA downstream 17492 39910587 ~ 39970912 (+) True G91049
XM_039807593.1 mRNA upstream 18352 39871711 ~ 39874177 (+) False LOC120563436
XM_039807997.1 mRNA upstream 205480 39604241 ~ 39687049 (+) True bcar1
XM_039809297.1 mRNA downstream 51621 39944716 ~ 39963408 (+) True ric8a
XM_039809298.1 mRNA downstream 51621 39944716 ~ 39963408 (+) False ric8a
XM_039809299.1 mRNA downstream 80523 39973618 ~ 39974980 (+) True LOC120564391
XM_039809947.1 mRNA downstream 377428 40270523 ~ 40277195 (+) True dnajc24
XM_039809936.1 mRNA downstream 483205 40376300 ~ 40400951 (+) True LOC120564733
TU122542 other upstream 18352 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 138864 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1012627 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1212442 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 1060513 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1572609 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1576148 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 1576148 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 1576148 41469243 ~ 41495311 (+) False vps9d1

Expression Profile