RNA id: XM_039807837.1


Basic Information

Item Value
RNA id XM_039807837.1
length 1699
RNA type mRNA
GC content 0.46
exon number 4
gene id gins3
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40703181 ~ 40710433 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaaaccatagactgtataacagGTAAAAACACGGACAACTTGACTCAGTTCGACTCAGATTGAATCGATTGCTCTGCTCTAGATCTGACAGCagcgctctgattggtcaacagGTCCTGGCGCCAAAATAGCAAGGAGGAAGAAGACTGGTAAACACAACAGGAGAGGTCTCTGCTCACAATTTCAGTATTTTCAGCATATACTTGATATAAAACTACTACTTTCGGTCTTATTCGGGCACACAATGGATACACAGTCATATCTACCTGTACAACCCGGGGTGGGGATGGGGGAGAATTTCCTGTCTCTCGACGATATTGTACTCTCTCATGAGAGACTTCCCATCCGGACAGAGTGCCGTTTTCCCCGGCTGGGATTTCTGGAGAAGTCGAGTGACTCGCAGGACATACCGGAGGTCGGTAAACTACGTGTggGTTTTTGGCTGTTCCAAGTCTTGAAGAAGAGGAGAGTGTTGTCAGTGGAGCTTCCGAAGGTGTACAGAGAGGGCTGGAGGACGGTGTTCAACGCAGACCCCAACGTAGTGGATCTGCATAAGATGGGGCCCTACTACTACGGCCTGGGGTCCCAGATGCTGCACTTCGACAGCCCAGAGAACCCCGAGATCGCACAGACGCTGCTGCAGACGTTCATCGGTCGCTTCAGACGGAACATGGACTCCTCCCAGAATGCCTACAACGAGGACACGTCTGCGCTGGTGGAGCGTCTGGACTgcctggagaaggctctgttcACGTCGGGGCAGAGCGGCCTCAACAGCTTCCAGAGCTGGGAGAAGGGTCAGGCCTCCCAACTCACCGCCTCCAGTCTGGTTCTCAACTACCGCAAAAGGAAGATCACTGATTTACAGCCCTGACCTGCAGCTAAAACATACAGAGACTGGCCAGAACTTAAGTCAGTACTTCAGAGCTGCACGACGGCAGCACTGacttttacattcattttcatttcgaTGACCctgcagggtttcccccagaaaagttgtgtagcccggtggcaagtgtctttttttttcgacGAGGTCCCAGGCTGGGGCCCAATCACAGATCAGGGGCTTTCCTGCATGAAGGAACTTTTGGCGCAAAAACATTGAGATAGATATGGATTAGGATTGAATTGAGACAGATTTCTAACCGGTTAAAAACTTCTCGCCGTGGTTTACTTTGGTTTTTCGGATCGACCAACTCTCGGGTATTGTTCGCAGTGTTTAAACAGACTGGACTTTGGGGTCAAGTGTACTCAGATCCAGGCCCAGGTCCCTAATCTAAAAGCccccttactgcattatattccattgtactttattactttttgaATTATCACCTGCCTCCTGAGTTCTGGGTTTTCCTTTCCATAAATAACGATCTTTCCAACATAAATTGGTGCtcaaaaatgtatcagaatgcaggaaatgaagtgtttggcACTCAAGATTTCCTGGGGGAGGACCCtcagcattttatttattttgttccaTTGTATGAGTTTTATGTAATCTCGACAATCTGACAGTGTGTTCATGATCACTTGGTGTTTTATCAAAAGTACTGAAACCGTTGGTTTAAAAGTTGGATTTTTGATGGAAATTCATTGATCTATGAATATGAATAGTTGGTTGCCGAAATTTGGTTGTTGATTAATTGTTTTAACATGTATCAAGTAAAGATTCCTAAAAATTG

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10734 GINS3; GINS complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122835 lncRNA upstream 170180 40526743 ~ 40533217 (+) True G91292
TU122830 lncRNA upstream 183610 40518365 ~ 40519787 (+) True G91288
TU122828 lncRNA upstream 194049 40508732 ~ 40509348 (+) True G91286
TU122827 lncRNA upstream 194689 40508138 ~ 40508708 (+) True G91285
TU122826 lncRNA upstream 196103 40507057 ~ 40507294 (+) True G91284
TU122919 lncRNA downstream 2311 40712744 ~ 40712954 (+) True G91358
TU122924 lncRNA downstream 16713 40727146 ~ 40727418 (+) True G91363
TU122947 lncRNA downstream 132645 40843078 ~ 40860888 (+) True G91383
TU122949 lncRNA downstream 237322 40947755 ~ 40950042 (+) False smpd3
TU123017 lncRNA downstream 350993 41061426 ~ 41064286 (+) False exoc3l1
XM_039809224.1 mRNA upstream 3115 40636125 ~ 40700282 (+) True znrf1
XM_039808907.1 mRNA upstream 69662 40613516 ~ 40633735 (+) True ldhd
XM_039808908.1 mRNA upstream 73775 40613516 ~ 40629622 (+) False ldhd
XM_039808792.1 mRNA upstream 117249 40559291 ~ 40586148 (+) True anpepa
XM_039809846.1 mRNA upstream 145533 40549248 ~ 40557864 (+) True si:dkey-12e7.1
XM_039807841.1 mRNA downstream 20326 40730759 ~ 40802151 (+) False ndrg4
XM_039807843.1 mRNA downstream 20326 40730759 ~ 40802151 (+) False ndrg4
XM_039807839.1 mRNA downstream 20331 40730764 ~ 40802151 (+) True ndrg4
XM_039807842.1 mRNA downstream 20331 40730764 ~ 40802151 (+) False ndrg4
XM_039807840.1 mRNA downstream 20333 40730766 ~ 40802151 (+) False ndrg4
TU122542 other upstream 829220 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 949732 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1823495 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 2023310 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 243175 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 755271 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 758810 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 758810 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 758810 41469243 ~ 41495311 (+) False vps9d1

Expression Profile