RNA id: XM_039809629.1


Basic Information

Item Value
RNA id XM_039809629.1
length 3483
RNA type mRNA
GC content 0.45
exon number 6
gene id si:ch211-212o1.2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35512384 ~ 35586541 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTGCGTCGCTTCTCTTCGAGACCGACATCAGGCACCGGTCCATGGCGGAGGAGGATCCGAACGGGAATGAGCACGGGGCGGCTGCACGCAGCGCGGCGCCTCGCTGGGGACCGCAGCACGCCGGGGCCCGGCAGCTCGCAAGGCTCTACTCTCCCGGGAAGCGGCTCCaggagtgggtgtgtgtgattCTCTGCTTCTTCCTTTTCATCATCaacttctccttcctcctcctgcaCTTCTCCGCCGTTCACATCTACAAGATCATCCTCGGCATCGtCCTGGGAATAGTGACGGCAGACTTTGCATCGGGGATGGTACACTGGGGGGCGGATACCTGGGGATCTGTGGACATCCCTGTTATTGGCAAGGCATTTATTCGTCCATTCAGGGAGCACCACATCGATCCAACCGCCATCACTCGCCACGACTTCATTGAAACCAATGGCGACAACTGTATGATACCCATCCTTCCACTGGCTCACATGGCCTACAAGTTCCTCACATACACACCAGAGGCCCTGACGGCGTCCTACCCCTGGGACTGCTACGTCTTCGCCCTGGCGGTTTTCGtgacgctgaccaatcagattcaCAAGTGGAGCCACTCCTACTTCGGCCTCCCGCGCTGGGTCACGCTGCTCCAGGACTGGCATCTGGTGTTGCCACGGAAACACCACCGCATCCACCATGTCTCACCGCACGAGACATACTACTGCATTACTACAGGTTGGTGTAACTATCCTCTGGACCGGCTGGGCTTTTGGAGACGAATGGAGGAATTGATCCAACAACTTACAGGGCAGAAACCACGATCTGATGACCTGGCGTGGGCCAAGAAGACCGACAGATGAACATTCAAAAACACAGacggacggatggatggatggatggatggatgggcttGCGAATGCATACATAGAAACAGGGACGGATGGGGGAaatcacacgcacgcacacacacacattttaacgatttaagtacagtatttaAGTCCACTCGAAGGGAACTATTTACAGGGACATAAATATTATAGATGCAGTTAAACACATAGACAAAACCATGGGCCATTGGCATACAGCAGGTCTTCATAAtattaagcacacacacacacacacacacacacacacacacacacacacagatttgacTCATGTCTCTGTGCTTCTTGCTTTTTTTTGCTAAAGAGCAAACATTCAAAGAAACCTTTTGGGGTTAAAAAACGTCTACCAAGCTTTGAGCGTGCGAGGTGAAAACATTAGCAGATCATAACCTAACTCTGCTGTAACAGCCAATCGGCTTGTAGTCCTGTTTAACCAATGACGTGTTGTGGTGTGTAGGTGTAGGAGGTTTCTGGAGGTTGGGCTCTCCAGGAGGGACACCGCGCTGCCTGTTGCAGGCAGCTtcttacaccacacacacatacatacacacatgcacacacaaaccagTATGAAAGTCAGATGTTCAGTCACTGTCTCTCCTGACTTCttcttgtctgtttttttctagCCCGTCCTAGAAACGTCACCGCCCTCTTTGAATTCTCATGACTGTTTCCTCACACACAAAGGTGAAAATTTGATAATTGTGTGCTTTGGATAACACATTCAGACCGGTATAACTCCCCTCTTTTGTGCCTGTGCTTGATTATCTCCACAGGCAAGACAAGACTTTTAGAGGAcaaacgtgtaaaaaaaaaaaagaaaaaaaggtttgataaaatacatactgtagcttccaTAATAACTTATAGCACTAATATAAATATGCCAGCAGTCAAGTTGCAGATGCAGACTTAACGCATGTGCAACTAAATCATGTCATCCAGTTTTGGTACGTTGTTAACAGCACTTTCTATTCACCCTACGTGTGCTTTGACAAACCGTTGGACTTTCTCTTGTTCAGACATTTCCCATAGATCTTATTGTACATAAACACGCTCGGAGTAGTCCCGCTATTTGTAGCTTTAGGAATACGAAGGCTGTGTACAAACGTTTCTAAATGAACGCACGGTATTTACTGCACACAAACTAATCCGTACAATCTCTTTGACTCCTCCGGAAGCAGTTATAAGGAGGTTTCATTAGAAGCTATGTTTTACTTGAATCCAGATGAGTTCCAAATTTTTGTCATAGTAAAGAAGCATTTAATCTCTTTGCACTTTCATGCAAATTAAAGAGGCAGCcagatgttttccttttttctcttttgtgaaTTACAATTTAAGTGAGGGAGGTGTCCACTACAAAATGAAGGCAACCGTGCGTTTCTTGGCAGGCAGAGTAAGGACACAGTTGAACTTGTAACTTGTGGTTTAGAAGAGTGTGTCATCACAATGCAGAAACAGAGAAAGTTTGGATGACAGGTTGATGTTCTTATATAAACTCAAATCTCTTTCCTCCATTTTAACATTAAGTGGCACAGACCGAAGCAGAACCTTCTTGGCGTCAACGGTTTCTCCCTTGCTGTACTTGTGCAGCGCCTGCAGACAGAAATCTATCCAGCAGAAGTTCCCGTTTCTGGGAGGATGCTTTGGGCTGCCCCAAAGGCTATAAAATGAGTCCTACATGTGTAGTTAGCATTAGCTTATCGCCACCACACTGGACGGCTCCGGGCAGGAAAGCTTACCTTGTTCTTGCTCTCCATGTTCTGCTTCTTGATTCTGCATAACTAGAATATTTTATGCAGCTTTGATTCACTTCACAACAGCCGGACCACTCCTTAAGAACGTCTGAATTATTTAAATTCTTAGGAAAGCTGGATTCTTAGGaaagaattctttttttatttaacagaacAGCATTTTGTACCACAAATTCACATTTGCAGTCTTTCATAAACATATGCAGTCATTCCGACCATTCTAGATTCGTTGCTGCGTTCGCATCCCGAATCCTCTTGTTGAAAAGAAATCTTGGAAAAATTGGTGCCGCTGTCTGCCCCACTGTGCTGCATATTTGACCGCAACTGTAAATACTAAACAACAAGAAATGTGTCACAAACCTCTAAACCTAAATCAGAGAAATTCATTAGAGAAATGCATGGCAACGTGTTTACCgcatagaaaagaaaaatactctTCAGCAAATGCTGGTTACCAAGTTGCTTAGATAATGCAAAATAATGTCTCCAGTATCActgatttctgtttgtttcataCAGTGACACACTTTAGTTGGCCGTTACTAACTCTGTACTTGAGAGTCTAGCTGCTTGACTTGTAGTTTAGGTTTAGGCTGGAAATCCCTTTGCTCACAGAAGGTCAATAATAACGGTCTGAAAATGTGTACTGCAAGCACTCATGTGTTTTCTCTGGCTTTataattttctattttcttttattaaaggATCAAGCCATGTATGGTTAAATTTTGGCGTTCCATTTTGCAGCTCAACGCGCGCTGCTCGCTGCTCGTCTTGCCTTAATGTTTTTATCTGCTCTTTGATTTAAATAAAAGATTTAAGAACTCCAAATGTT

Function

GO: NA

KEGG:

id description
K20656 TMEM189; plasmanylethanolamine desaturase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121130 lncRNA upstream 345274 35166738 ~ 35167110 (+) True G89969
TU121120 lncRNA upstream 386243 35111312 ~ 35126141 (+) True G89960
TU121088 lncRNA upstream 465729 34932900 ~ 35046655 (+) True G89950
TU121085 lncRNA upstream 521986 34951944 ~ 34990398 (+) False LOC120563677
TU121077 lncRNA upstream 697458 34814403 ~ 34814926 (+) True G89942
TU121335 lncRNA downstream 108366 35694907 ~ 35695485 (+) True G90125
TU121336 lncRNA downstream 109464 35696005 ~ 35696764 (+) True G90126
TU121341 lncRNA downstream 110956 35697497 ~ 35697701 (+) True G90131
TU121351 lncRNA downstream 184455 35770996 ~ 35771401 (+) True G90138
TU121364 lncRNA downstream 326530 35913071 ~ 35913280 (+) True G90151
XM_039808980.1 mRNA upstream 5100 35338892 ~ 35507284 (+) True znf423
XM_039808982.1 mRNA upstream 5100 35338892 ~ 35507284 (+) False znf423
XM_039808983.1 mRNA upstream 5100 35338892 ~ 35507284 (+) False znf423
XM_039808984.1 mRNA upstream 5100 35338892 ~ 35507284 (+) False znf423
XM_039809369.1 mRNA upstream 218248 35277266 ~ 35294136 (+) True si:ch211-216l23.2
XM_039807509.1 mRNA downstream 73172 35659713 ~ 35693705 (+) True cbln1
XM_039808979.1 mRNA downstream 431727 36018268 ~ 36048411 (+) True n4bp1
XM_039809667.1 mRNA downstream 479087 36065628 ~ 36106450 (+) False siah1
XM_039809662.1 mRNA downstream 479087 36065628 ~ 36106450 (+) False siah1
XM_039809664.1 mRNA downstream 479087 36065628 ~ 36106450 (+) False siah1
unassigned_transcript_382 other upstream 301453 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 1077067 34434089 ~ 34435317 (+) True G89836
TU120882 other upstream 1091203 34381836 ~ 34421181 (+) True G89813
TU120880 other upstream 1150007 34360484 ~ 34362377 (+) True G89811
TU120644 other upstream 2282334 33118201 ~ 33230050 (+) False jph3b
TU121355 other downstream 198153 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_383 other downstream 876945 36463486 ~ 36463568 (+) True trnal-cag_1
XR_005640145.1 other downstream 2435836 38022377 ~ 38034694 (+) True wfdc1
TU121880 other downstream 2467968 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 3071825 38658366 ~ 38680087 (+) False G90686

Expression Profile