jph3b (jph3,LOC103360672)


Basic Information

Item Value
gene id jph3b
gene name jph3,LOC103360672
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 33118201 ~ 33230110 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU120644
cgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatgtaagACTCAGGAGCTGGCGAGTGTGTGCTACCAGGATGATACTTCCCTgtctacacaaacacacccattgCTATTACCCGATCCCTCTCATTCATCTGTCCCCGTTCTGATGTCTGTCTCCTCTCATTCTTCATCTTATGCTGGGAGTacgaatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtttgtgtgggtgtgggtgtgtatgcttatgtgtgtctctgcatactgtatatgtatgtttgctGTGTGCCTAAATGTTTTTTGCAGAATGTGAGCGTGTTTGCAACTGTATCAAGCAGGCATGTCTTGTCCACATTTGTGTGTACGTATGAATGCGCGTGTGTGTGGTCTCCAAGTAGCTCAGTGGCCTTTCACGCTGTTCATGAACTTGACAAGAGCATTTCAAGAGGACACAGTCACTGCTCATCCACATCTAGCCTATACTAGCATCAGCTGACAGCTGtgctctctctccgtctctccctcctactctctcccacctccacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagtcagAGAATGGAGCTTCCTCCGTGTTGGTGGTAGTTCAAGACAGACCGTCCTTGGCAACGCGCTGCACCTACTGTACCCCCAGCAGAGGTATTTAGAGGAAATACTGCATTCACCGAAGCAAAGCCTGTATGTGTAACACCAGAAAAATGGCTTTAAAGTCaatatcaatttaaaaaatctgTGTATCCCACTGCTTCTCTCAAAACATAACCTGAAGACGACGTCATCTTTTATACTATACTTGCAAGATGTCTGAAAAAATTACTAGTCGCCACCTGCCTTGCTTTTGTAGTGCAAATTGATAAATGTACAacaatgcatgcatgtgtactGTAATATCTTAGTTGTGCATTAAAtctgaaagcaaaaaaaaagcttcagaaGCACATGTTAAGTTTTGATAGGAGCAGTGTCTCGAGAGAAGCCATTTTGGTACTGATCATGAAGCTGGAATTAAACAGCGGAGTCAAAATTTCTTTTGTGGACTCTTATTGATCTTCGCTGGGTGTTAAATGAAAGTCCAAGCAACCTGAAAGGAATTCACTTGAATTCATTGGAAGGCTTTTGGTGAAATGATGCAAGTCTGTTGTAGTGTAGTAGCAAGCAGTGGCCTGGATCGCGGCAAGGATTTACCGCCTCGTCTCCATTCCTCAGCTTCTCCTCCAACTATCCAAGACCCtcagtgacagacagacagacagacagacagacagaaacaccaGTCACAATTTGTCTATTTTTTATAGTCAAAGGAAGACACtgggtttttctgtgtgtgtgtgtctcaaaacCAGTGTTTGTTTGCATGCGTGCACACGAATGAATGCTCATCGGACTGTGTGAACATGTGTGCACATCCGCCTCCCTCCACAAGCTGGGATGGGATGGCTGAGCCTGTTGCCATCGGTAACAACTTCCAGGGGGCAGGGAGGTTCGCTGTTGTTTTTCTGTCCGACAGCGTTTCTCAAACTATGGACTGGAACTCCAACTCGACTGTAGGCTCATTTCTGGTGTTTCCCCACATTATTACAAGAGCACAGTCTAATGTGCCCGCACCCTGCGAGGCAGaacaatgtattttcatttcattttggtCCCAGACTGAAAAAGATTCAAGAAGCTCTGCTGTATGCCATCAGCCTGGTGACGGTGCCCTGCGTCACCCTGTTAGTCCGCAGCATGCTACAGCATGCCAAGCTACTCTCTCTCTATAGTTtgactctttctttctttctttctttctttctttctttctttctttctttctttcttt
>XM_039808976.1
cacacacagatcaggagagagagagagagagagagagagagagagagagatacagccATAGGAGGAGATGAGATTGTAAGACCAAGACAGCAGGCAGGAAGGCAGGCAGGCTGTGCGTCAGCCGGCGCTCCATAGGGAAACATGGAGACAAGCAGGAGATGCTGAAGAGGACAGAACACACCATAACAGGATCATACAGATGGATGTTATTTCATCAAGCAGGCAACCTGAAGGCAACAGAGGATAAACCACTTATGGACGCAGTGGATTAAAGACCTACAGACAgactgagagagggagagggaataTAGGGAAGgagaaattaattaattcacttgtttattttcattgtctgtgtgtgcgcactTGCTGTCagaaagactgtgtgtgtgcctgtgtacgGTGTGTGCGTGCATAAGGCAGGAAACTGCATTGCTGCTCCCCAGCACCACAGGATAGACAAAAAAAGAAGGCAGCCGAGCAGATTACCTTATGTGTTTTCCCCATTTTTCTGTctctatgcatgtgtgtgttccttCGCTGTGCAACCAGGcacagtatgtgtgtctgtgtgtgtgaaggctGAGAATAAGAAGAGGATGGTGAAGTGAGCTGCAGATTCTGACTTTAAATAGTCTTTaaattgtctttctttttttttttttttggtctgatCATCGGGACCGAGCTTAAGAAACAGaatatttctctttttatttctttcttcatCACACAACATGTTACAGCATCGGTGCTGATCAGAGAGCCTAAGGGTGGCTTCTATGCTGGAGGCTTGGAGGTTTGAAGGGCTGCCACCCGGGACACTTCTCGGCTCTACACCCCAGGGAGGTGTAGGCATCATCAGGTAGGAGGCAGCTGAACGCGGGGGTCTGAGCGGAAAGCAGGACAGGAGTAGGAGTAAGAGTTGTGCGCGTGTGTCGTGGACTGTGTAGGCAGGCCGATGGCCGGCCGGTGGAACTGCCTGATGGTTTAAACTCCTGCTGAGAGAGGATAATGGCAGTTCTGGGCCCACTCTCGTCCTCTCTCACCTGCATCTTCCACAGCAAAGCTGGAAAGTGCTACAAGGAGCCCACTAAGAGGATGGTGTGAACAGTCTCACCATTTCCCTCCACGCCGGGAAACCCTGACACCCCTGTGAGGGGGCCACGTTTTGTTGTTCACCTTgtttctccttcctcttctccaaACCAGCTGAAAACAAGGGGTGGCGTTGCTTGATTTGTGTGGGAGTTCTCTCACTCTCCTCATCCTCACCCCTGACCTCACCTACCTCCAAACTGAGCTCCATGGACTGGTTTTAGCACCAACCTGTCCTTTTTTCTCCCttcgttttctttttctttactttttctttttgtcgaGGCTTCAGGGGAATTGCCAAGACCTGTTTCATGCATGTCCACTGGCGGCAGGTTCAACTTTGACGATGGGGGGTCATACTGCGGAGGGTGGGAGGAGGGCAAGGCACACGGGCACGGGATCTGCACGGGACCCAAGGGCCAGGGCGAGTACTGCGGTTCCTGGGCCCATGGCTTCGAGCTGCTGGGCGTCTACACTTGGCCTAGTGGGAACACCTACAAGGGCACCTGGGCTCAGGGCAAGAGACACGGTGTGGGCGTCGAGAATAAAGGCCGCTGGGTGTACAAGGGCGAGTGGACGCACGGCTTTAAGGGACGCTACGGCGTGCGGGAGAGCACGGGGACCAGCGGAAAGTACGAGGGGACTTGGAACAATGGGCTGCAGGACGGATACGGAACAGAGACGTATTCAGATGGAGGAACATTCCAAGGCCAGTGGGTTGGCGGGATGCGGCATGGCTACGGAGTTCGCCAGAGTGTCCCATATGGCATGGCGGCCGTCATCCGCTCCCCACTCCGTACTTCCATAAACTCTCTCCGCTCCGGTTCGGAGCACAGCAATGGTACAGCTCTGCTGGACCGGACCGGGGCGGTGGTTCCTGGTCCTCCTCCTGTTCCTGGCACTTTGACCACCAGCGTCTCCATGTGCAGCACgggcagcagcggcagcagcccCGCTGTGTCTCGGGGAGGTTTTGTGCTGACGGCACACAGCGAGGCTGAGCTGCTGAAGGGTAAGAGAAAAGGCGGGCTGTTCCGGAGATCCATCCTGTCTGGGCTCAAGCTGAGGAAGTCAGAGTCCAGGAGCTCCCTGGCCTCCCAGAGGTCCAAACAGAGTTCGTTCAGGAGCGAGGCTGGGATGAGTACTGTGTCCTCTGCTGCATCTGATATCAACTCCACAATCAGTCTTGGAGATGCAGATGCAGAGTTGGCCGTTGCAGATGACGATGTGGATGCCACGGCAACAGAGACCTACTGCGGGGAGTGGAAGAACGACAAGCGGACAGGATTCGGTGTGAGTCGGCGGTCTGATGGGCTGCAGTACGAGGGGGAGTGGCTTAGCAACAAACGCCACGGCTACGGCTGCACCACGTTTCCTGATGGCACAAAAGAGGAAGGGAAGTACAAACAGAACATCTTGGTGAGCGGCAAAAGGAAGAACCTGATCCCTCTCCGGGCCAGTAAGATCAGAGAGAAGGTGGACCGAGCCGTGGAGGGAGCACAGAAAGCAGCCGACATTGCCCAGCAGAAGGCTGAGATCGCCTTGTCCAGGACGGCTCATGCACAGGGTAAAGCCGAGGCAGCAGTAGGAGCAGCTCAGAAAGCCCAGGAGGAGAGTCGCATGGCGAGGGTCACCGCCAAGCAGTTCTCCCCTTCGTTCCAGCACCCAGGAAATGGCATGGAGGTGCAGCGTCCCAAACGTCAGGTGTCCAGCGAGGTGGAGGGTGAGGGGTTGTCGAGTAGCGCTGGCACCGCTGACAGCCCCGACCTTTATGTAAAGAGCGCGGGCTCCGACGACCCATCTAACGACGCCGCCACCCCTGATCTCAGCCCTCCTTCTTCTTCACCGCCCCACACCCCTCCTCCCCCTGCCAGGCCGTCCCAACGGAGCAAGAGTGCCCGCTTCCACCGACAGAGTGCCGTGGACCACGGGGACAAGGGGAAGGACGGAGGAGAAAGGGGTGAGAAAGGTGGTGGAGGAGGGCAGACGGAGATCCAGGTGTTGATGGAGGGAGGAAGTGGGGGAGGTgaaagtggaggaggagggaagggggAGTACACGCGGGCCAACAGCTGGAGCGAAGACAAGCGGAGAGGGATATTGTCGAAAGGAGGAGGTGTGCTCAGCGGACGAGGAGCGAGCCGCACcaatggacacaaacacagctccTCCAATCACAAGGCCCGGGAGCACGGATCGTCCAATCACAGACAGGCCAGAGGGGACAGGTGGACAGAGTCGTCCTCGTCTGCGTCTTGGACGTCGGGGCGCAGGGGCGTGCACGGTAGGGGAGGCCGGCTACTGGAGCAGGATGAGGAGAAAATAAGCAATTATGAGATGGAGATGAAGCCTTTACAGCCCAGAGACTCCACTACCCACAAGCCCCATGGGCCCGGGGAGGAGAGGCCTGGGCATAGTCATGCTCATGGAGAGGAGCGGCCGCACACCGTGCAACGACAGAGGCATAAGAACCGTGAAGggggagaagaaaaggagaggagggaagggGGGAAAGACTCAGCGCACAAGCTGGGGGAAAAGATGGATTCACGGCCTCTACGTCGGGACCTCACTCTCTCCCCCCCGCTGAAGTCCTCCCCCATCACACCGGAGCAGCAGGACCACAGCCTCATGCAGAGCAAAGGCAACCCGGCCTACAGCTCTTTCCTGGTTGTCATGGTGATTTTGCTCAACATTGGAGTGGCTGTTTTGTTTAtccacttttttatttaaagacagCACAGCTTTCCAAGTCAGCCCATCGTTACAACAACTAGAAATTCATATGAGTATTACGACGACTCTGCTTTCGTTTTCCTGGCGGTTCCTGGACTGCAACCGGCTGAAAGAAGACAAGGTCCAAGGAGGGCTCCACCAATATTTGGGCTAAAGGTAGCTAAGCCGGGCTAACCTCGCCTAAGCTTGGTCCAGTCGTTTTGGAAGAGACGCGGAAGTGGACAAAAGAGGGGTAAACCAGTCCAGGTAACTGGACTACAGGGAGATAATATAGTCCAGAAACTGGACTAAAGTGAGCTTCAGTAGttcacacacagactcaaatGGGCTGAACCGGTCTGATCCCCAGGCCATGCAGAGCTGCAGCTGGCATTACAGCGAGATGTCTGCTTCCACTGTCTGCAGACCTGACTGACAAGACAGACTTTTTCATCCTCAAATCATAGTTTTCAACAGATTTGTAacttataatttatttattaacatttTCTCTCATGTACAATATGTTGATGGatatattctttattttgtaacCCTCCACCCCTCTTTATATAACTCCTGCCTTTTGGTTCCTCCACCTGCCCGGATGTTGTTACTGATGGTTCAaggtgtgtgttcatgtgtgtgttcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatgtaagACTCAGGAGCTGGCGAGTGTGTGCTACCAGGATGATACTTCCCTgtctacacaaacacacccattgCTATTACCCGATCCCTCTCATTCATCTGTCCCCGTTCTGATGTCTGTCTCCTCTCATTCTTCATCTTATGCTGGGAGTacgaatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtttgtgtgggtgtgggtgtgtatgcttatgtgtgtctctgcatactgtatatgtatgtttgctGTGTGCCTAAATGTTTTTTGCAGAATGTGAGCGTGTTTGCAACTGTATCAAGCAGGCATGTCTTGTCCACATTTGTGTGTACGTATGAATGCGCGTGTGTGTGGTCTCCAAGTAGCTCAGTGGCCTTTCACGCTGTTCATGAACTTGACAAGAGCATTTCAAGAGGACACAGTCACTGCTCATCCACATCTAGCCTATACTAGCATCAGCTGACAGCTGtgctctctctccgtctctccctcctactctctcccacctccacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagtcagAGAATGGAGCTTCCTCCGTGTTGGTGGTAGTTCAAGACAGACCGTCCTTGGCAACGCGCTGCACCTACTGTACCCCCAGCAGAGGTATTTAGAGGAAATACTGCATTCACCGAAGCAAAGCCTGTATGTGTAACACCAGAAAAATGGCTTTAAAGTCaatatcaatttaaaaaatctgTGTATCCCACTGCTTCTCTCAAAACATAACCTGAAGACGACGTCATCTTTTATACTATACTTGCAAGATGTCTGAAAAAATTACTAGTCGCCACCTGCCTTGCTTTTGTAGTGCAAATTGATAAATGTACAacaatgcatgcatgtgtactGTAATATCTTAGTTGTGCATTAAAtctgaaagcaaaaaaaaagcttcagaaGCACATGTTAAGTTTTGATAGGAGCAGTGTCTCGAGAGAAGCCATTTTGGTACTGATCATGAAGCTGGAATTAAACAGCGGAGTCAAAATTTCTTTTGTGGACTCTTATTGATCTTCGCTGGGTGTTAAATGAAAGTCCAAGCAACCTGAAAGGAATTCACTTGAATTCATTGGAAGGCTTTTGGTGAAATGATGCAAGTCTGTTGTAGTGTAGTAGCAAGCAGTGGCCTGGATCGCGGCAAGGATTTACCGCCTCGTCTCCATTCCTCAGCTTCTCCTCCAACTATCCAAGACCCtcagtgacagacagacagacagacagacagacagaaacaccaGTCACAATTTGTCTATTTTTTATAGTCAAAGGAAGACACtgggtttttctgtgtgtgtgtgtctcaaaacCAGTGTTTGTTTGCATGCGTGCACACGAATGAATGCTCATCGGACTGTGTGAACATGTGTGCACATCCGCCTCCCTCCACAAGCTGGGATGGGATGGCTGAGCCTGTTGCCATCGGTAACAACTTCCAGGGGGCAGGGAGGTTCGCTGTTGTTTTTCTGTCCGACAGCGTTTCTCAAACTATGGACTGGAACTCCAACTCGACTGTAGGCTCATTTCTGGTGTTTCCCCACATTATTACAAGAGCACAGTCTAATGTGCCCGCACCCTGCGAGGCAGaacaatgtattttcatttcattttggtCCCAGACTGAAAAAGATTCAAGAAGCTCTGCTGTATGCCATCAGCCTGGTGACGGTGCCCTGCGTCACCCTGTTAGTCCGCAGCATGCTACAGCATGCCAAGCTACTCTCTCTCTATAGTTtgactctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttatgtttctggGAATtacatctgttttgtttttgagttaTGTGGAGAAAAT

Function

symbol description
jph3 Predicted to be involved in regulation of synaptic plasticity. Predicted to act upstream of or within several processes, including learning; neuromuscular process controlling balance; and regulation of neuronal synaptic plasticity. Predicted to be located in endoplasmic reticulum. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Implicated in Huntington's disease-like 2.

NR:

description
PREDICTED: junctophilin-3-like

GO: NA

KEGG:

id description
K19530 JPH; junctophilin

RNA

RNA id representative length rna type GC content exon number start site end site
TU120644 False 1983 TUCP 0.45 2 33118201 33230050
XM_039808976.1 True 6491 mRNA 0.51 6 33154660 33230110

Neighbor

gene id symbol gene type direction distance location
slc7a5 slc7a5 coding upstream 68284 33018395 ~ 33049917 (+)
ca5a ca5a,LOC104941612 coding upstream 130103 32964255 ~ 32988098 (+)
uba2 uba2 coding upstream 156757 32946693 ~ 32961444 (+)
usb1 usb1 coding upstream 199226 32913231 ~ 32918975 (+)
snrkb LOC107103095,LOC101069520,LOC107389226 coding upstream 358700 32737802 ~ 32759501 (+)
zcchc14 zcchc14 coding downstream 1268 33231378 ~ 33295605 (+)
tsnaxip1 NA coding downstream 203887 33433997 ~ 33444330 (+)
nutf2 nutf2 coding downstream 225386 33455496 ~ 33466411 (+)
edc4 edc4 coding downstream 238046 33468156 ~ 33508852 (+)
nrn1la nrn1l,LOC103481208,LOC102228515 coding downstream 281315 33511425 ~ 33630572 (+)
G89553 NA non-coding upstream 110048 33007812 ~ 33008153 (+)
G89550 NA non-coding upstream 116612 33001260 ~ 33001589 (+)
G89546 NA non-coding upstream 133717 32943417 ~ 32984484 (+)
G89541 pla2g15,LOC104948923,LOC108246911,LOC103379465,LOC107103093,LOC107103416 non-coding upstream 192261 32922382 ~ 32925940 (+)
G89538 NA non-coding upstream 205179 32912283 ~ 32913022 (+)
G89616 map1lc3b non-coding downstream 74616 33304726 ~ 33318892 (+)
G89659 NA non-coding downstream 159092 33389202 ~ 33392247 (+)
G89664 ranbp10 non-coding downstream 166189 33396299 ~ 33396985 (+)
G89676 NA non-coding downstream 222964 33453074 ~ 33453437 (+)
G89723 NA non-coding downstream 479140 33709250 ~ 33710209 (+)
klhdc4 klhdc4,LOC104957904,LOC104953735 other upstream 2660 33085856 ~ 33115541 (+)
G89540 znf319,LOC104967809,LOC102797175 other upstream 206474 32905936 ~ 32911727 (+)
LOC120564557 ccdc73 other upstream 490527 32593584 ~ 32627674 (+)
G89409 NA other upstream 621639 32490143 ~ 32496562 (+)
LOC120564413 NA other upstream 1148712 31964413 ~ 31969489 (+)
G89811 LOC100698998 other downstream 1130374 34360484 ~ 34362377 (+)
G89813 NA other downstream 1151726 34381836 ~ 34421181 (+)
G89836 NA other downstream 1203979 34434089 ~ 34435317 (+)
LOC120563677 gnao1,LOC103367675,LOC108249535,LOC107660763,LOC100693875 other downstream 1617453 34847563 ~ 34990412 (+)
G90142 NA other downstream 2554584 35784694 ~ 35785416 (+)

Expression


Co-expression Network